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EBI Dbfetch

ID   AF523294; SV 1; linear; genomic DNA; STD; HUM; 6967 BP.
XX
AC   AF523294;
XX
DT   03-JUL-2002 (Rel. 72, Created)
DT   17-JUN-2008 (Rel. 96, Last updated, Version 4)
XX
DE   Homo sapiens clone 1471 MHC class Ib antigen (HLA-F) gene, HLA-F*new2
DE   allele, complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-6967
RX   DOI; 10.1007/s00251-005-0076-z.
RX   PUBMED; 16570139.
RA   Pyo C.W., Williams L.M., Moore Y., Hyodo H., Li S.S., Zhao L.P.,
RA   Sageshima N., Ishitani A., Geraghty D.E.;
RT   "HLA-E, HLA-F, and HLA-G polymorphism: genomic sequence defines haplotype
RT   structure and variation spanning the nonclassical class I genes";
RL   Immunogenetics 58(4):241-251(2006).
XX
RN   [2]
RP   1-6967
RA   Ishitani A., Miki A., Williams L.M., Moore Y., Geraghty D.E.;
RT   ;
RL   Submitted (21-JUN-2002) to the INSDC.
RL   Clinical Division, Fred Hutchinson Cancer Research Center, 1100 Fairview
RL   Ave. N., D4-100, Seattle, WA 98109-1024, USA
XX
DR   MD5; bec410b5d699da93d9e14a70996200d4.
DR   Ensembl-Gn; ENSG00000137403; homo_sapiens.
DR   Ensembl-Gn; ENSG00000204642; homo_sapiens.
DR   Ensembl-Gn; ENSG00000206509; homo_sapiens.
DR   Ensembl-Gn; ENSG00000229698; homo_sapiens.
DR   Ensembl-Gn; ENSG00000235220; homo_sapiens.
DR   Ensembl-Gn; ENSG00000237508; homo_sapiens.
DR   Ensembl-Tr; ENST00000259951; homo_sapiens.
DR   Ensembl-Tr; ENST00000334668; homo_sapiens.
DR   Ensembl-Tr; ENST00000359076; homo_sapiens.
DR   Ensembl-Tr; ENST00000376848; homo_sapiens.
DR   Ensembl-Tr; ENST00000376861; homo_sapiens.
DR   Ensembl-Tr; ENST00000383515; homo_sapiens.
DR   Ensembl-Tr; ENST00000420067; homo_sapiens.
DR   Ensembl-Tr; ENST00000434407; homo_sapiens.
DR   Ensembl-Tr; ENST00000440590; homo_sapiens.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..6967
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /mol_type="genomic DNA"
FT                   /clone="1471"
FT                   /db_xref="taxon:9606"
FT   gap             995..1362
FT                   /estimated_length=368
FT   gene            <1941..>4858
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*new2"
FT   mRNA            join(<1941..2004,2135..2404,2650..2925,3481..3756,
FT                   3897..4013,4461..4493,4854..>4858)
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*new2"
FT                   /product="MHC class Ib antigen"
FT   CDS             join(1941..2004,2135..2404,2650..2925,3481..3756,
FT                   3897..4013,4461..4493,4854..4858)
FT                   /codon_start=1
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*new2"
FT                   /product="MHC class Ib antigen"
FT                   /db_xref="GOA:P30511"
FT                   /db_xref="HGNC:HGNC:4963"
FT                   /db_xref="IMGT/HLA:F*01:01:02:04"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/Swiss-Prot:P30511"
FT                   /protein_id="AAM74989.1"
FT                   /translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIA
FT                   VEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLR
FT                   RYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQI
FT                   TQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATL
FT                   RCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCH
FT                   VQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGS
FT                   YSQAAV"
XX
SQ   Sequence 6967 BP; 1539 A; 1663 C; 1784 G; 1613 T; 368 other;
     ggtaatggaa cagtgctaga gccactattc aggagtgaca gagtggtggg gactaaggga        60
     agaggagggc ctgagggatg agagggacgg agggaagggc tggagaagca ggaggtgagg       120
     agaaggagca gagggacaga atttgaaagc agcagaattc ttagctttaa acacattgtt       180
     ttataaattt ttaaacacat tgttttataa atttgtaata catccatcta cagagcctag       240
     cagggtgttc cttgcatttg gcctttaaca ccgtatgtgg gactgcctaa aaattaattg       300
     ctttttctgc tttttttcag gtttaaaaaa atactaagtg ttccaataaa acatgcacac       360
     cacttaggtg cggatacttc ctaaaaacag gaagtgcatt agcactggtg aggggcattg       420
     tgactgcgtt gaacacttgc aactttgagg tgaatgaatg tattggctcc tggttgcaat       480
     atacaatcac acgttgtgct actttgtatt gtcaggagat gtcctggact cccacagaaa       540
     ctcagggcta tggaatgaag gtaattttag aatacaacaa gagtcacaga tacatagtct       600
     gggaaagcaa aacttaggag ctctgagagt tgtacaactg taatgcattt agacatattt       660
     atatatcaag gggccaaagt aacatttttt acacataaga ttcctgatcg gtcgggcgcg       720
     gtggctcatg cctgtaatcg cagcactttg ggaggccgag gcgggaggat cacgaggtca       780
     ggagatcgag accatcctgg ctaacacgat gaaacccgtc tctacaaaaa aattagccgg       840
     gcgtggtggc gggcatctgt agtctcagct actcgggagg ctgaagcaga agaatggcgt       900
     gaacccggga ggcagagctt gcagtgagcc gagatcgcgc cactgcactc cagcctgggc       960
     ggcagagaga ctccgtctca aaaaaaaaaa aaaannnnnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nngaagaaga ggaagaagaa      1380
     gaaactgtct ctacaccttc attctcagga caagttcatt gtctggcacc aagctccttg      1440
     gggtgaattt tcttccaaaa gagtccgggg agtccaggta tggaatggga ggcagaaagt      1500
     tcaatcaagg gactgggatt tcggaatgaa taatgaaggg agatggactg ggtccatgcc      1560
     gaaggtttct ccctggtttc tcagcccccg ggcgaagact cagggagaca ttgagacaca      1620
     ccctgcacag gagggggagg gggaggggga gggcaaagtc ccagggcccc aggagtggct      1680
     ctcaagggct caggccccga ggcggtgtct ggggttggga ggctcagtat tgagaattcc      1740
     ccatctcccc agagtttctc tttctctccc aacccgtgtc aggtccttct tcctggttac      1800
     tcataacgcg gccccatttc tcactcccat tgggcgtcgg gtttctagag aagccaatca      1860
     gtgtcgccgc agttcccagg ttctaaagtc ccacgcaccc cgcgggactc atatttttcc      1920
     cagacgcgga ggttggggtc atggcgcccc gaagcctcct cctgctgctc tcaggggccc      1980
     tggccctgac cgatacttgg gcaggtgagt gcggggtcca gagagaaacg gcctctgtgg      2040
     ggaggagtga ggggcccgcc cggtgggggc gcaggactca gggagccgcg cccggaggag      2100
     ggtctggcgg gtctcagccc ctcctcgccc ccaggctccc actccttgag gtatttcagc      2160
     accgctgtgt cgcggcccgg ccgcggggag ccccgctaca tcgccgtgga gtacgtagac      2220
     gacacgcaat tcctgcggtt cgacagcgac gccgcgattc cgaggatgga gccgcgggag      2280
     ccgtgggtgg agcaagaggg gccgcagtat tgggagtgga ccacagggta cgccaaggcc      2340
     aacgcacaga ctgaccgagt ggccctgagg aacctgctcc gccgctacaa ccagagcgag      2400
     gctggtgagt gaccccggcc gggggcgcag gtcacgacca cccgccatcc gccacggacc      2460
     gcccgggtcc ctcagagtct ccggatccga aatctacccc gaggcagcgg gacccgccca      2520
     gaccctccac ccgggagagt cccaggcgcc tttacccagg ttcattttca gtttaggcca      2580
     aaatccccgc gggttgggcg gggagggggc ggggctagct gggcggggct gactgcgggg      2640
     accggctagg gtctcacacc ctccagggaa tgaatggctg cgacatgggg cccgacggac      2700
     gcctcctccg cgggtatcac cagcacgcgt acgacggcaa ggattacatc tccctgaacg      2760
     aggacctgcg ctcctggacc gcggcggaca ccgtggctca gatcacccag cgcttctatg      2820
     aggcagagga atatgcagag gagttcagga cctacctgga gggcgagtgc ctggagttgc      2880
     tccgcagata cttggagaat gggaaggaga cgctacagcg cgcaggtacc aggggccatg      2940
     ggcgccttcc ctatctcctg tagatctctt gggatggcct cgcacaaggt tgggaggaaa      3000
     gtgggcccaa tgctaggata tcgccctccc tctggtcctg agtaggaaga atcttcctgg      3060
     ctttcgagat ccggtaccag agagtgactg tgagagtccg ccctgctctc tgggacaatt      3120
     aagggatgaa atggagggaa gacagtccct ggtccccttt gagccctcca acagccttgg      3180
     gccccgtgac ttttctctca agttttgttc tctgcctcac actcaatgtg tttggggctc      3240
     tgattccagt ccctcggcct ccacttaggt cagggccaga agtccctgct ccccgctcag      3300
     agactcgaac tttccaagga ataggagatt ttcccaggtg tctgtgtcca ggctggtgtc      3360
     tgggttctgt gctcccttcc ccaccccagg tgtcctgtcc agtctcaggt tggtcacatg      3420
     ggtgctgctg gggtttccca tgaggagtgc aaagtgcctg aattttctga ctcttctcag      3480
     atcctccaaa ggcacacgtt gcccaccacc ccatctctga ccatgaggcc accctgaggt      3540
     gctgggccct gggcttctac cctgcggaga tcacgctgac ctggcagcgg gatggggagg      3600
     aacagaccca ggacacagag cttgtggaga ccaggcctgc aggggatgga accttccaga      3660
     agtgggccgc tgtggtggtg ccttctggag aggaacagag atacacatgc catgtgcagc      3720
     acgaggggct gccccagccc ctcatcctga gatggggtaa ggagggagat gggtaaagag      3780
     gggaatgagg ggtcatgtct tttctcaggg aaagcaggag cccttctgga gctcttcagc      3840
     agggtcaggg ctgaggcctg gagatcaggg cccctcacct tcccttcctt tcccagagca      3900
     gtctccccag cccaccatcc ccatcgtggg catcgttgct ggccttgttg tccttggagc      3960
     tgtggtcact ggagctgtgg tcgctgctgt gatgtggagg aagaagagct caggtaggaa      4020
     ggggtgagga gtggagtctg agttttcttg tcccactggg ggttgcaagc cccaagtaga      4080
     agtgtgccct gcctcattac tgggaagcac catccacact catgggtcta cccagcctgg      4140
     gccctgtgtg ccagcaccta ctcatttgta aggctcctgt gaaaatgaag gacagattct      4200
     tcacttcgat gattatggtg gtgatgggac ctgatcccag cagtcacaaa tcacagggga      4260
     aggtccctgc tgatgacaga cctcaggagg gcagttggtc caggacccac atctgctttc      4320
     ttcatatttc ttgatcctgc cctggatcta cagttacact tttctggaaa cttctctggg      4380
     atcaaagact aggggtttgc tctaggacct tatggccctg cctcctttct ggcctctcac      4440
     aggacatttt cttcccatag atagaaacag agggagctac tctcaggctg caggtaagat      4500
     gaaggaggct gatccctgag attgttggga tattgtggtc aggagcctat gagggagctc      4560
     acccacccca cagttcctct agccacatct gtgggctctg accaggtcct gtttttgttc      4620
     taccccaatc actgacagtg cccagggctc tggggtgtct ctcacagcta ataaaggtga      4680
     cactccaggg caggggccct gatgtgagtg gggtgttggg gggggaacag aggggactca      4740
     gctgtgctat tgggtttctt tgacttggat gtcttgagca tgaaatgggc tatttagagt      4800
     gttacctctc actgtgactg atacgaattt gttcatgaat attttctcta tagtgtgaga      4860
     cagcttcctt gtgtgggact gagaagcaag atatcaatgt agcagaattg cacttgtgcc      4920
     tcacgaacat acataaattt taaaaataaa gaataaaaat atatcttttt atagatacag      4980
     gtagatatgt ttttatagca tgcacgtaaa tgtgtgtgtg tgtgtgtgtg tgaagagaaa      5040
     gagtgaatag agagattaag attcttttaa tggtgaaaag atatacatat atttggaact      5100
     agccagcttg actcagttta ggtgatccca attttggtgg caacaaccaa agcatcgtag      5160
     tcaggagcca gtcgaacata tgccttcctc tctccatcag actgaatcag agtgttgact      5220
     ttggccacat caatgtcaca agcttcttca cagcctgttt gatctggtgc ttgttggctt      5280
     taacatccac agtgaacaca agtaggctgt tgttttctat cttcttcaca gcctactcag      5340
     tggtcagcgg actcttgatg ataacatggt ggtcaagctt atttctcctg ggggtgctct      5400
     tccaaggata tttgggctgc ctccggagtc acagtgtctt gggccgccgg aaggtgggtg      5460
     acatgtggat cttgtttttt ttgtggctgt ggacatcttt caacactgcc ttcttggcct      5520
     tgcaaagcct tcgctttggc ttcggcttta ggaggggcag gagcttcctt cttcgttctt      5580
     ggcaccatct tatgaaaagg gtccagatta agatttttga ctgagtcatt ctaaagtaag      5640
     ttgcaagacc catgatacta gaccactaaa tacttcatca cacacctcct aagaataaga      5700
     accaacatta tcacaccaaa gaaaataaat aattccataa tattatttaa agtcctttta      5760
     tgttcaaata tctccacttc tttcagtaca tttttgtacc tattttttat agcttgtttt      5820
     cttaaaatgt ccactcgttg cctttggtta tgtttcttta attacctaca atctataaca      5880
     atcaacccat cttttttctt ttagaatggc attacctgtt tcagagatga ggccaaatac      5940
     ctgtggaatc ttctccacac tgaatttatc atattatttc ccctgatgcc tttaactttt      6000
     ttcctctaac tgctatgcct cctaaggacc tatgtagctc tgggttaaac atttggcagc      6060
     aatgtttaca ggaggagctg tgaccgcaca ttcatcacat caggaggcac acaaagccta      6120
     gggttaccag gactctttct gaccccatac agccaaattt atcctgactt cccagagatg      6180
     cagaaccatg ggctgggtgt ttagtgggta tgagtgtgat attctggcaa taggaggttc      6240
     tgccactctc cccattcctc acgagcttta ggtccccata ccctgaggtt ctgagctcca      6300
     gaccttcaac catcaggcca ggcccctcca gacctagact cccttcctgt cttctccagc      6360
     cccactctgc tttgtatcta cttccggatc actttccctc tacaggccca gctcctgagt      6420
     gtctctacct ctcaaacaag tattctcatc caggagcaat tttcccacca gaggacatta      6480
     gctatgtctg gaaaaatgtt ttgttgccat gactggagtg aggaggaggt gctaccagca      6540
     tcttgtgggg aatgaccagg gatgctgaac atcctgcagt gcacaagtca gcccaatcac      6600
     ccacataaca gataattatc cagccccaat accaagattg ccaagggtag gaggcctgcc      6660
     aggactttct ctcccttgag tacaagcttc cttgaactga gggacaccct gaaggaaaag      6720
     tgtggtccca ccccagtcat ctctcccttc cctggagctc catctgtatg cctgtagtgc      6780
     ttaggccctt aacctggggt ccaggaaccc accttcccat gagactgcat gcagaagtga      6840
     tgatatgtgc acacatgact tcattacagg gcattggata ttgatattca tcaggtcagc      6900
     tggggcccaa gacaccactc ttctgccaac aggccgcaat cctctgcatt agagagaggg      6960
     taaagat                                                                6967
//


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