Dbfetch
ID AF523288; SV 1; linear; genomic DNA; STD; HUM; 7000 BP.
XX
AC AF523288;
XX
DT 03-JUL-2002 (Rel. 72, Created)
DT 17-JUN-2008 (Rel. 96, Last updated, Version 4)
XX
DE Homo sapiens clone WDV MHC class Ib antigen (HLA-F) gene, HLA-F*0101
DE allele, complete cds.
XX
KW .
XX
OS Homo sapiens (human)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC Homo.
XX
RN [1]
RP 1-7000
RX DOI; 10.1007/s00251-005-0076-z.
RX PUBMED; 16570139.
RA Pyo C.W., Williams L.M., Moore Y., Hyodo H., Li S.S., Zhao L.P.,
RA Sageshima N., Ishitani A., Geraghty D.E.;
RT "HLA-E, HLA-F, and HLA-G polymorphism: genomic sequence defines haplotype
RT structure and variation spanning the nonclassical class I genes";
RL Immunogenetics 58(4):241-251(2006).
XX
RN [2]
RP 1-7000
RA Ishitani A., Miki A., Williams L.M., Moore Y., Geraghty D.E.;
RT ;
RL Submitted (21-JUN-2002) to the INSDC.
RL Clinical Division, Fred Hutchinson Cancer Research Center, 1100 Fairview
RL Ave. N., D4-100, Seattle, WA 98109-1024, USA
XX
DR MD5; d65d6fd6b90999f6343bc71552579ca4.
DR Ensembl-Gn; ENSG00000137403; homo_sapiens.
DR Ensembl-Gn; ENSG00000204642; homo_sapiens.
DR Ensembl-Gn; ENSG00000206509; homo_sapiens.
DR Ensembl-Gn; ENSG00000229698; homo_sapiens.
DR Ensembl-Gn; ENSG00000235220; homo_sapiens.
DR Ensembl-Gn; ENSG00000237508; homo_sapiens.
DR Ensembl-Tr; ENST00000259951; homo_sapiens.
DR Ensembl-Tr; ENST00000334668; homo_sapiens.
DR Ensembl-Tr; ENST00000359076; homo_sapiens.
DR Ensembl-Tr; ENST00000376848; homo_sapiens.
DR Ensembl-Tr; ENST00000376861; homo_sapiens.
DR Ensembl-Tr; ENST00000383515; homo_sapiens.
DR Ensembl-Tr; ENST00000420067; homo_sapiens.
DR Ensembl-Tr; ENST00000434407; homo_sapiens.
DR Ensembl-Tr; ENST00000440590; homo_sapiens.
DR IMGT/HLA; HLA-F*01:01:01:01; HLA01096.
XX
FH Key Location/Qualifiers
FH
FT source 1..7000
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /mol_type="genomic DNA"
FT /clone="WDV"
FT /db_xref="taxon:9606"
FT gap 997..1364
FT /estimated_length=368
FT gene <1943..>4886
FT /gene="HLA-F"
FT /allele="HLA-F*0101"
FT mRNA join(<1943..2006,2137..2406,2652..2927,3510..3785,
FT 3926..4042,4490..4522,4882..>4886)
FT /gene="HLA-F"
FT /allele="HLA-F*0101"
FT /product="MHC class Ib antigen"
FT CDS join(1943..2006,2137..2406,2652..2927,3510..3785,
FT 3926..4042,4490..4522,4882..4886)
FT /codon_start=1
FT /gene="HLA-F"
FT /allele="HLA-F*0101"
FT /product="MHC class Ib antigen"
FT /db_xref="GOA:P30511"
FT /db_xref="HGNC:HGNC:4963"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="InterPro:IPR037055"
FT /db_xref="PDB:5IUE"
FT /db_xref="PDB:5KNM"
FT /db_xref="UniProtKB/Swiss-Prot:P30511"
FT /protein_id="AAM74983.1"
FT /translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIA
FT VEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLR
FT RYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQI
FT TQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATL
FT RCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCH
FT VQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGS
FT YSQAAV"
XX
SQ Sequence 7000 BP; 1558 A; 1667 C; 1788 G; 1619 T; 368 other;
ggtaatggaa cagtgctaga gccactattc aggagtgaca gagtggtggg gactaaggga 60
agaggagggc ctgagggatg agagggacgg agggaagggc tggagaagca ggaggtgagg 120
agaaggagca gagggacaga atttgaaagc agcagaattc ttagctttaa acacattgtt 180
ttataaattt ttaaacacat tgttttataa atttttaata catccatcta cagagcctag 240
cagggtgttc cttgcatttg gcctttaaca ccttatgtgg gactgcctaa aaattaattg 300
ctttttctgc tttttttcag gtttaaaaaa atactaagtg ttccaataaa acatgcacac 360
cacttagatg cggatacttc ctaaaaacag gaagtgcatg agcactggtg aggggcattg 420
tgactgcgtt gaacacttgc aactttgagg tgaatgaatg tattggctcc tggttgcaat 480
atacaatcac acgttgtgct actttgtatt gtcaggagat gtcctggact cccacagaaa 540
ctcagggcta tggaatgaag gtaattttag aatacaacaa gagtcacaga tacatagtct 600
gggaaagcaa aacttaggag ctctgagagt tgtacaactg taatgcattt agacacattt 660
atatatcaag gggccaaagt aacagttttt acacataaga ttcctgattg gtcgggcgcg 720
gtggctcatg cctgtaattg cagcactttg ggaggccgag gcgggaggat cacgaggtca 780
ggagatcgag accatcctgg ctaacacggt gaaacccgtc tctacaaaaa aattagccgg 840
gcgtggtggc gggcatctgt agtctcagct actcgggagg ctgaagcaga agaatggcgt 900
gaacccggga cgcagagctt gcagtgagcc gagatcgcgc cactgcactc cagcctgggc 960
ggcagagaga gactccgtct caaaaaaaaa aaaaaannnn nnnnnnnnnn nnnnnnnnnn 1020
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1080
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1140
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1200
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1260
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1320
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngaagaa gaggaagaag 1380
aagaaactgt ctctagacct tcattctcag gacaagttca ttgtctggca ccaagctcct 1440
tggggtgaat tttcttccaa aagagtccgg ggagtccagg tatggaatgg gaggcagaaa 1500
gttcaatcaa gggactggga tttcggaatg aataatgaag ggagatggac tgggtccatg 1560
ccgaaggttt ctccctggtt tctcagcccc cgggcgaaga ctcagggaga cattgagaca 1620
caccctgcac aggaggggga gggggagggg gagggcaaag tcccagggcc ccaggagtgg 1680
ctctcaaggg ctcaggcccc gaggcggtgt ctggggttgg aaggctcagt attgagaatt 1740
ccccatctcc ccagagtttc tctttctctc ccaacccgtg tcaggtcctt catcctggat 1800
actcataacg cggccccatt tctcactccc attgggcgtc gcgtttctag agaagccaat 1860
cagtgtcgcc gcagttccca ggttctaaag tcccacgcac cccgcgggac tcatattttt 1920
cccagacgcg gaggttgggg tcatggcgcc ccgaagcctc ctcctgctgc tctcaggggc 1980
cctggccctg accgatactt gggcgggtga gtgcggggtc cagagagaaa cggcctctgt 2040
ggggaggagt gaggggcccg cccggtgggg gcgcaggact cagggagccg cgcccggagg 2100
agggtctggc gggtctcagc ccctcctcgc ccccaggctc ccactccttg aggtatttca 2160
gcaccgctgt gtcgcggccc ggccgcgggg agccccgcta catcgccgtg gagtacgtag 2220
acgacacgca attcctgcgg ttcgacagcg acgccgcgat tccgaggatg gagccgcggg 2280
agccgtgggt ggagcaagag gggccgcagt attgggagtg gaccacaggg tacgccaagg 2340
ccaacgcaca gactgaccga gtggccctga ggaacctgct ccgccgctac aaccagagcg 2400
aggctggtga gtgaacccgg ccgggggcgc aggtcacgac caccccccat ccgccacgga 2460
ccgcccgggt ccccccgagt ctccggatcc gaaatctacc ccgaggcagc gggacccgcc 2520
cagaccctcc acccgggaga gtcccaggcg cctttaccga ggttcatttt cagtttaggc 2580
caaaatcccc gcgggttggg cggggagggg gcggggctag ctgggcgggg ctgactgcgg 2640
ggaccggcta gggtctcaca ccctccaggg aatgaatggc tgcgacatgg ggcccgacgg 2700
acgcctcctc cgcgggtatc accagcacgc gtacgacggc aaggattaca tctccctgaa 2760
cgaggacctg cgctcctgga ccgcggcgga caccgtggct cagatcaccc agcgcttcta 2820
tgaggcagag gaatatgcag aggagttcag gacctacctg gagggcgagt gcctggagtt 2880
gctccgcaga tacttggaga atgggaagga gacgctacag cgcgcaggta ccaggggcca 2940
tgggcgcctt ccctatctcc tgtagatctc ttgggatggc ctcgcacaag gttgggagga 3000
aagtgggccc aatgctagga tatcgccctc cctctagtcc tgagtaggaa gaatcttcct 3060
ggctttcgag atccggtacc agagagtgac tgtgagagtc cgccctgctc tctgggacaa 3120
ttaagggatg aaatctctga gggaatggag ggaagacagt ccctggaata ccgatccgcg 3180
gtcccctttg agccctccaa cagccttggg ccccgtgact tttctctcaa gttttgttct 3240
ctgcctcaca ctcaatgtgt ttggggctct gattccagtc cctcggcctc cacttaggtc 3300
agggccagaa gtccctgctc cccactcaga gactcgaact ttccaaggaa taggagattt 3360
tcccaggtgt ctgtgtccag gctggtgtct gggttctgtg ctcccttccc caccccaggt 3420
gtcctgtcca ttctcaggtt ggtcacatgg gtgctgctgg ggtttcccat gaggagtgca 3480
aagtgcctga attttctgac tcttctcaga tcctccaaag gcacacgttg cccaccaccc 3540
catctctgac catgaggcca ccctgaggtg ctgggccctg ggcttctacc ctgcggagat 3600
cacgctgacc tggcagcggg atggggagga acagacccag gacacagagc ttgtggagac 3660
caggcctgca ggggatggaa ccttccagaa gtgggccgct gtggtggtgc cttctggaga 3720
ggaacagaga tacacatgcc atgtgcagca cgaggggctg ccccagcccc tcatcctgag 3780
atggggtaag gagggagatg ggtaaagagg ggaacgaggg gtcatgtctt ttctcaggga 3840
aagcaggagc ccttctggag ctcttcagca gggtcagggc tgaggcctgg agatcagggc 3900
ccctcacctt cccttccttt cccagagcag tctccccagc ccaccatccc catcgtgggc 3960
atcgttgctg gccttgttgt ccttggagct gtggtcactg gagctgtggt cgctgctgtg 4020
atgtggagga agaagagctc aggtaggaag gggtgaggag tggagtctga gttttcttgt 4080
cccactgggg gttgcaagcc ccaagtagaa gtgtgccctg cctcattact gggaagcacc 4140
atccacactc atgggtctac ccagcctggg ccctgtgtgc cagcacctac tcatttgtaa 4200
agctcctgtg aaaatgaagg acagattctt cacttcgatg attatggtgg tgatgggacc 4260
tgatcccagc agtcacaaat cacaggggaa ggtccctgct gatgacagac ctcaggaggg 4320
cagttggtcc aggacccaca tctgctttct tcatatttct tgatcctgcc ctggatctac 4380
agttacactt ttctggaaac ttctctggga tcaaagacta ggggtttgct ctaggacctt 4440
atggccctgc ctcctttctg gcctctcaca ggacattttc ttcccataga tagaaacaga 4500
gggagctact ctcaggctgc aggtaagatg aaggaggctg atccctgaga ttgttgggat 4560
attgtggtca ggagcctatg agggagctca cccaccccac agttcctcta gccacatctg 4620
tgggctctga ccaggtcctg tttttgttct accccaatca ctgacagtgc ccagggctct 4680
ggggtgtctc tcacagctaa taaaggtgac actccagggc aggggccctg atgtgagtgg 4740
ggtgttgggg gggaacagag gggactcagc tgtgctattg ggtttctttg acttggatgt 4800
cttgagcatg aaatgggcta tttagagtgt tacctctcac tgtgactgat acgaatttgt 4860
tcatgaatat tttctctata gtgtgagaca gcttccttgt gtgggactga gaagcaagat 4920
atcaatgtag cagaattgca cttgtgcctc acgaacatac ataaatttta aaaataaaga 4980
ataaaaatat atctttttat agatacaggt agatatgttt ttatagcatg cacgtaaatg 5040
tgtgtgtgtg tgtgtgtgtg tgtgaagaga aagagtgaat agagagatta agattctttt 5100
aatggtgaaa agatatacat atatttggaa ttagccagct tgactcagtt taggtgatcc 5160
caattttggt ggcaacaacc aaagcatcgt agtcaggagc cagtcgaaca tatgccttcc 5220
tctctccatc agactgaatc agagtgttga ctttggccac atcaatgtca caaacttctt 5280
cacagcctgt ttgatctggt gcttgttggc tttaacatcc acagtgaaca caagtaggct 5340
gttgttttct atcttcttca cagcctactc agtggtcagc ggaaacttga tgataacatg 5400
gtggtcaagc ttatttctcc tgggggtgct cttccaagga tatttgggct gcctccggag 5460
tcacagtgtc ttgggccgcc ggaaggtggg tgacatgtgg atcttgtttt ttttgtggct 5520
gtggacatct ttcaacactg ccttcttggc cttgcaaagc cttcgctttg gcttcggctt 5580
taggaggggc aggagcttcc ttcttcgttc ttggcaccat cttatgaaaa gggtccagat 5640
taagattttt gactgagtca ttctaaagta agttgcaaga cccatgatac tagaccacta 5700
aatacttcat cacacacctc ctaagaataa gaaccaacat tatcacacca aagaaaataa 5760
ataattccat aatattattt aaagtccttt tatgttcaaa tatctccact tctttcagta 5820
catttttgta cctatttttt atagcttgtt ttcttaaaat gtccactcgt tgcctttggt 5880
tatgtttctt taattaccta caatctataa caatcaaccc atcttttttc ttttagaatg 5940
gcattacctg tttcagagat gaggccaaat acctgtggaa tcttctccac actgaattta 6000
tcatattagt tcccctgatg cctttaactt ttttcctcta actgctatgc ctcctaagga 6060
cctatgtagc tctgggttaa acatttggca gcaatgttta caggaggagc tgtgaccgca 6120
cattcatcac atcaggaggc acacaaagcc tagggttacc aggactctta ctgaccccat 6180
acagccaaat ttatcctgac ttcccagaga tgcagaacca tgggctgggt gtttagtggg 6240
tatgagtgtg atattctggc aataggaggt tctgccactc tccccattcc tcacgagctt 6300
tagttcccca taccctgagg ttctgagctc cagaccttca accatcaggc caggcccctc 6360
cagacctaga ctcccttcct gtcttctcca gccccactct gctttgtatc tacttctgga 6420
tcactttccc tctacaggcc cagctcctga gtgtctctac ctctcaaaca agtattctca 6480
tccaggagca attttcccac cagaggacat tagctatgtc tggaaaaatg ttttgttgcc 6540
atgactggag tgaggagaag gtgctaccag catcttgtgg ggaatgacca gggatgctga 6600
acatcctgca gtgcacaagt cagcccaatc acccacataa cagataatta tccagcccca 6660
ataccaagat tgccaagggt aaggaggcct gccaggactt tctctccctt gagtacaagc 6720
ttccttgaac tgagggacac cctgaaggaa aagtgtggtc ccaccccagt catctctccc 6780
ttccctggag ctccatctgt atgcctgtag tgcttaggcc tgtaacctgg ggtccaggaa 6840
cccaccttcc catgagactg catgcagaag tgatgatatg tgcacacatg acttcattac 6900
agggcattgg atattgatat tcatcaggtc agctggggcc caagacacta ctcttctgcc 6960
aacaggccgc aatcctctgc attagagaga gggtaaagat 7000
//