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EBI Dbfetch

ID   AF523287; SV 1; linear; genomic DNA; STD; HUM; 7000 BP.
XX
AC   AF523287;
XX
DT   03-JUL-2002 (Rel. 72, Created)
DT   17-JUN-2008 (Rel. 96, Last updated, Version 4)
XX
DE   Homo sapiens clone WT24 MHC class Ib antigen (HLA-F) gene, HLA-F*0101
DE   allele, complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-7000
RX   DOI; 10.1007/s00251-005-0076-z.
RX   PUBMED; 16570139.
RA   Pyo C.W., Williams L.M., Moore Y., Hyodo H., Li S.S., Zhao L.P.,
RA   Sageshima N., Ishitani A., Geraghty D.E.;
RT   "HLA-E, HLA-F, and HLA-G polymorphism: genomic sequence defines haplotype
RT   structure and variation spanning the nonclassical class I genes";
RL   Immunogenetics 58(4):241-251(2006).
XX
RN   [2]
RP   1-7000
RA   Ishitani A., Miki A., Williams L.M., Moore Y., Geraghty D.E.;
RT   ;
RL   Submitted (21-JUN-2002) to the INSDC.
RL   Clinical Division, Fred Hutchinson Cancer Research Center, 1100 Fairview
RL   Ave. N., D4-100, Seattle, WA 98109-1024, USA
XX
DR   MD5; d65d6fd6b90999f6343bc71552579ca4.
DR   Ensembl-Gn; ENSG00000137403; homo_sapiens.
DR   Ensembl-Gn; ENSG00000204642; homo_sapiens.
DR   Ensembl-Gn; ENSG00000206509; homo_sapiens.
DR   Ensembl-Gn; ENSG00000229698; homo_sapiens.
DR   Ensembl-Gn; ENSG00000235220; homo_sapiens.
DR   Ensembl-Gn; ENSG00000237508; homo_sapiens.
DR   Ensembl-Tr; ENST00000259951; homo_sapiens.
DR   Ensembl-Tr; ENST00000334668; homo_sapiens.
DR   Ensembl-Tr; ENST00000359076; homo_sapiens.
DR   Ensembl-Tr; ENST00000376848; homo_sapiens.
DR   Ensembl-Tr; ENST00000376861; homo_sapiens.
DR   Ensembl-Tr; ENST00000383515; homo_sapiens.
DR   Ensembl-Tr; ENST00000420067; homo_sapiens.
DR   Ensembl-Tr; ENST00000434407; homo_sapiens.
DR   Ensembl-Tr; ENST00000440590; homo_sapiens.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..7000
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /mol_type="genomic DNA"
FT                   /clone="WT24"
FT                   /db_xref="taxon:9606"
FT   gap             997..1364
FT                   /estimated_length=368
FT   gene            <1943..>4886
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*0101"
FT   mRNA            join(<1943..2006,2137..2406,2652..2927,3510..3785,
FT                   3926..4042,4490..4522,4882..>4886)
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*0101"
FT                   /product="MHC class Ib antigen"
FT   CDS             join(1943..2006,2137..2406,2652..2927,3510..3785,
FT                   3926..4042,4490..4522,4882..4886)
FT                   /codon_start=1
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*0101"
FT                   /product="MHC class Ib antigen"
FT                   /db_xref="GOA:P30511"
FT                   /db_xref="HGNC:HGNC:4963"
FT                   /db_xref="IMGT/HLA:F*01:01:01:01"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/Swiss-Prot:P30511"
FT                   /protein_id="AAM74982.1"
FT                   /translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIA
FT                   VEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLR
FT                   RYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQI
FT                   TQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATL
FT                   RCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRYTCH
FT                   VQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGS
FT                   YSQAAV"
XX
SQ   Sequence 7000 BP; 1558 A; 1667 C; 1788 G; 1619 T; 368 other;
     ggtaatggaa cagtgctaga gccactattc aggagtgaca gagtggtggg gactaaggga        60
     agaggagggc ctgagggatg agagggacgg agggaagggc tggagaagca ggaggtgagg       120
     agaaggagca gagggacaga atttgaaagc agcagaattc ttagctttaa acacattgtt       180
     ttataaattt ttaaacacat tgttttataa atttttaata catccatcta cagagcctag       240
     cagggtgttc cttgcatttg gcctttaaca ccttatgtgg gactgcctaa aaattaattg       300
     ctttttctgc tttttttcag gtttaaaaaa atactaagtg ttccaataaa acatgcacac       360
     cacttagatg cggatacttc ctaaaaacag gaagtgcatg agcactggtg aggggcattg       420
     tgactgcgtt gaacacttgc aactttgagg tgaatgaatg tattggctcc tggttgcaat       480
     atacaatcac acgttgtgct actttgtatt gtcaggagat gtcctggact cccacagaaa       540
     ctcagggcta tggaatgaag gtaattttag aatacaacaa gagtcacaga tacatagtct       600
     gggaaagcaa aacttaggag ctctgagagt tgtacaactg taatgcattt agacacattt       660
     atatatcaag gggccaaagt aacagttttt acacataaga ttcctgattg gtcgggcgcg       720
     gtggctcatg cctgtaattg cagcactttg ggaggccgag gcgggaggat cacgaggtca       780
     ggagatcgag accatcctgg ctaacacggt gaaacccgtc tctacaaaaa aattagccgg       840
     gcgtggtggc gggcatctgt agtctcagct actcgggagg ctgaagcaga agaatggcgt       900
     gaacccggga cgcagagctt gcagtgagcc gagatcgcgc cactgcactc cagcctgggc       960
     ggcagagaga gactccgtct caaaaaaaaa aaaaaannnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngaagaa gaggaagaag      1380
     aagaaactgt ctctagacct tcattctcag gacaagttca ttgtctggca ccaagctcct      1440
     tggggtgaat tttcttccaa aagagtccgg ggagtccagg tatggaatgg gaggcagaaa      1500
     gttcaatcaa gggactggga tttcggaatg aataatgaag ggagatggac tgggtccatg      1560
     ccgaaggttt ctccctggtt tctcagcccc cgggcgaaga ctcagggaga cattgagaca      1620
     caccctgcac aggaggggga gggggagggg gagggcaaag tcccagggcc ccaggagtgg      1680
     ctctcaaggg ctcaggcccc gaggcggtgt ctggggttgg aaggctcagt attgagaatt      1740
     ccccatctcc ccagagtttc tctttctctc ccaacccgtg tcaggtcctt catcctggat      1800
     actcataacg cggccccatt tctcactccc attgggcgtc gcgtttctag agaagccaat      1860
     cagtgtcgcc gcagttccca ggttctaaag tcccacgcac cccgcgggac tcatattttt      1920
     cccagacgcg gaggttgggg tcatggcgcc ccgaagcctc ctcctgctgc tctcaggggc      1980
     cctggccctg accgatactt gggcgggtga gtgcggggtc cagagagaaa cggcctctgt      2040
     ggggaggagt gaggggcccg cccggtgggg gcgcaggact cagggagccg cgcccggagg      2100
     agggtctggc gggtctcagc ccctcctcgc ccccaggctc ccactccttg aggtatttca      2160
     gcaccgctgt gtcgcggccc ggccgcgggg agccccgcta catcgccgtg gagtacgtag      2220
     acgacacgca attcctgcgg ttcgacagcg acgccgcgat tccgaggatg gagccgcggg      2280
     agccgtgggt ggagcaagag gggccgcagt attgggagtg gaccacaggg tacgccaagg      2340
     ccaacgcaca gactgaccga gtggccctga ggaacctgct ccgccgctac aaccagagcg      2400
     aggctggtga gtgaacccgg ccgggggcgc aggtcacgac caccccccat ccgccacgga      2460
     ccgcccgggt ccccccgagt ctccggatcc gaaatctacc ccgaggcagc gggacccgcc      2520
     cagaccctcc acccgggaga gtcccaggcg cctttaccga ggttcatttt cagtttaggc      2580
     caaaatcccc gcgggttggg cggggagggg gcggggctag ctgggcgggg ctgactgcgg      2640
     ggaccggcta gggtctcaca ccctccaggg aatgaatggc tgcgacatgg ggcccgacgg      2700
     acgcctcctc cgcgggtatc accagcacgc gtacgacggc aaggattaca tctccctgaa      2760
     cgaggacctg cgctcctgga ccgcggcgga caccgtggct cagatcaccc agcgcttcta      2820
     tgaggcagag gaatatgcag aggagttcag gacctacctg gagggcgagt gcctggagtt      2880
     gctccgcaga tacttggaga atgggaagga gacgctacag cgcgcaggta ccaggggcca      2940
     tgggcgcctt ccctatctcc tgtagatctc ttgggatggc ctcgcacaag gttgggagga      3000
     aagtgggccc aatgctagga tatcgccctc cctctagtcc tgagtaggaa gaatcttcct      3060
     ggctttcgag atccggtacc agagagtgac tgtgagagtc cgccctgctc tctgggacaa      3120
     ttaagggatg aaatctctga gggaatggag ggaagacagt ccctggaata ccgatccgcg      3180
     gtcccctttg agccctccaa cagccttggg ccccgtgact tttctctcaa gttttgttct      3240
     ctgcctcaca ctcaatgtgt ttggggctct gattccagtc cctcggcctc cacttaggtc      3300
     agggccagaa gtccctgctc cccactcaga gactcgaact ttccaaggaa taggagattt      3360
     tcccaggtgt ctgtgtccag gctggtgtct gggttctgtg ctcccttccc caccccaggt      3420
     gtcctgtcca ttctcaggtt ggtcacatgg gtgctgctgg ggtttcccat gaggagtgca      3480
     aagtgcctga attttctgac tcttctcaga tcctccaaag gcacacgttg cccaccaccc      3540
     catctctgac catgaggcca ccctgaggtg ctgggccctg ggcttctacc ctgcggagat      3600
     cacgctgacc tggcagcggg atggggagga acagacccag gacacagagc ttgtggagac      3660
     caggcctgca ggggatggaa ccttccagaa gtgggccgct gtggtggtgc cttctggaga      3720
     ggaacagaga tacacatgcc atgtgcagca cgaggggctg ccccagcccc tcatcctgag      3780
     atggggtaag gagggagatg ggtaaagagg ggaacgaggg gtcatgtctt ttctcaggga      3840
     aagcaggagc ccttctggag ctcttcagca gggtcagggc tgaggcctgg agatcagggc      3900
     ccctcacctt cccttccttt cccagagcag tctccccagc ccaccatccc catcgtgggc      3960
     atcgttgctg gccttgttgt ccttggagct gtggtcactg gagctgtggt cgctgctgtg      4020
     atgtggagga agaagagctc aggtaggaag gggtgaggag tggagtctga gttttcttgt      4080
     cccactgggg gttgcaagcc ccaagtagaa gtgtgccctg cctcattact gggaagcacc      4140
     atccacactc atgggtctac ccagcctggg ccctgtgtgc cagcacctac tcatttgtaa      4200
     agctcctgtg aaaatgaagg acagattctt cacttcgatg attatggtgg tgatgggacc      4260
     tgatcccagc agtcacaaat cacaggggaa ggtccctgct gatgacagac ctcaggaggg      4320
     cagttggtcc aggacccaca tctgctttct tcatatttct tgatcctgcc ctggatctac      4380
     agttacactt ttctggaaac ttctctggga tcaaagacta ggggtttgct ctaggacctt      4440
     atggccctgc ctcctttctg gcctctcaca ggacattttc ttcccataga tagaaacaga      4500
     gggagctact ctcaggctgc aggtaagatg aaggaggctg atccctgaga ttgttgggat      4560
     attgtggtca ggagcctatg agggagctca cccaccccac agttcctcta gccacatctg      4620
     tgggctctga ccaggtcctg tttttgttct accccaatca ctgacagtgc ccagggctct      4680
     ggggtgtctc tcacagctaa taaaggtgac actccagggc aggggccctg atgtgagtgg      4740
     ggtgttgggg gggaacagag gggactcagc tgtgctattg ggtttctttg acttggatgt      4800
     cttgagcatg aaatgggcta tttagagtgt tacctctcac tgtgactgat acgaatttgt      4860
     tcatgaatat tttctctata gtgtgagaca gcttccttgt gtgggactga gaagcaagat      4920
     atcaatgtag cagaattgca cttgtgcctc acgaacatac ataaatttta aaaataaaga      4980
     ataaaaatat atctttttat agatacaggt agatatgttt ttatagcatg cacgtaaatg      5040
     tgtgtgtgtg tgtgtgtgtg tgtgaagaga aagagtgaat agagagatta agattctttt      5100
     aatggtgaaa agatatacat atatttggaa ttagccagct tgactcagtt taggtgatcc      5160
     caattttggt ggcaacaacc aaagcatcgt agtcaggagc cagtcgaaca tatgccttcc      5220
     tctctccatc agactgaatc agagtgttga ctttggccac atcaatgtca caaacttctt      5280
     cacagcctgt ttgatctggt gcttgttggc tttaacatcc acagtgaaca caagtaggct      5340
     gttgttttct atcttcttca cagcctactc agtggtcagc ggaaacttga tgataacatg      5400
     gtggtcaagc ttatttctcc tgggggtgct cttccaagga tatttgggct gcctccggag      5460
     tcacagtgtc ttgggccgcc ggaaggtggg tgacatgtgg atcttgtttt ttttgtggct      5520
     gtggacatct ttcaacactg ccttcttggc cttgcaaagc cttcgctttg gcttcggctt      5580
     taggaggggc aggagcttcc ttcttcgttc ttggcaccat cttatgaaaa gggtccagat      5640
     taagattttt gactgagtca ttctaaagta agttgcaaga cccatgatac tagaccacta      5700
     aatacttcat cacacacctc ctaagaataa gaaccaacat tatcacacca aagaaaataa      5760
     ataattccat aatattattt aaagtccttt tatgttcaaa tatctccact tctttcagta      5820
     catttttgta cctatttttt atagcttgtt ttcttaaaat gtccactcgt tgcctttggt      5880
     tatgtttctt taattaccta caatctataa caatcaaccc atcttttttc ttttagaatg      5940
     gcattacctg tttcagagat gaggccaaat acctgtggaa tcttctccac actgaattta      6000
     tcatattagt tcccctgatg cctttaactt ttttcctcta actgctatgc ctcctaagga      6060
     cctatgtagc tctgggttaa acatttggca gcaatgttta caggaggagc tgtgaccgca      6120
     cattcatcac atcaggaggc acacaaagcc tagggttacc aggactctta ctgaccccat      6180
     acagccaaat ttatcctgac ttcccagaga tgcagaacca tgggctgggt gtttagtggg      6240
     tatgagtgtg atattctggc aataggaggt tctgccactc tccccattcc tcacgagctt      6300
     tagttcccca taccctgagg ttctgagctc cagaccttca accatcaggc caggcccctc      6360
     cagacctaga ctcccttcct gtcttctcca gccccactct gctttgtatc tacttctgga      6420
     tcactttccc tctacaggcc cagctcctga gtgtctctac ctctcaaaca agtattctca      6480
     tccaggagca attttcccac cagaggacat tagctatgtc tggaaaaatg ttttgttgcc      6540
     atgactggag tgaggagaag gtgctaccag catcttgtgg ggaatgacca gggatgctga      6600
     acatcctgca gtgcacaagt cagcccaatc acccacataa cagataatta tccagcccca      6660
     ataccaagat tgccaagggt aaggaggcct gccaggactt tctctccctt gagtacaagc      6720
     ttccttgaac tgagggacac cctgaaggaa aagtgtggtc ccaccccagt catctctccc      6780
     ttccctggag ctccatctgt atgcctgtag tgcttaggcc tgtaacctgg ggtccaggaa      6840
     cccaccttcc catgagactg catgcagaag tgatgatatg tgcacacatg acttcattac      6900
     agggcattgg atattgatat tcatcaggtc agctggggcc caagacacta ctcttctgcc      6960
     aacaggccgc aatcctctgc attagagaga gggtaaagat                            7000
//


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