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EBI Dbfetch

ID   AF523284; SV 1; linear; genomic DNA; STD; HUM; 6998 BP.
XX
AC   AF523284;
XX
DT   03-JUL-2002 (Rel. 72, Created)
DT   17-JUN-2008 (Rel. 96, Last updated, Version 4)
XX
DE   Homo sapiens clone SCHU MHC class Ib antigen (HLA-F) gene, HLA-F*new1
DE   allele, complete cds.
XX
KW   .
XX
OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
XX
RN   [1]
RP   1-6998
RX   DOI; 10.1007/s00251-005-0076-z.
RX   PUBMED; 16570139.
RA   Pyo C.W., Williams L.M., Moore Y., Hyodo H., Li S.S., Zhao L.P.,
RA   Sageshima N., Ishitani A., Geraghty D.E.;
RT   "HLA-E, HLA-F, and HLA-G polymorphism: genomic sequence defines haplotype
RT   structure and variation spanning the nonclassical class I genes";
RL   Immunogenetics 58(4):241-251(2006).
XX
RN   [2]
RP   1-6998
RA   Ishitani A., Miki A., Williams L.M., Moore Y., Geraghty D.E.;
RT   ;
RL   Submitted (21-JUN-2002) to the INSDC.
RL   Clinical Division, Fred Hutchinson Cancer Research Center, 1100 Fairview
RL   Ave. N., D4-100, Seattle, WA 98109-1024, USA
XX
DR   MD5; 9329a0e5864f9e1bfc080e143198bdff.
DR   Ensembl-Gn; ENSG00000137403; homo_sapiens.
DR   Ensembl-Gn; ENSG00000204642; homo_sapiens.
DR   Ensembl-Gn; ENSG00000206509; homo_sapiens.
DR   Ensembl-Gn; ENSG00000229698; homo_sapiens.
DR   Ensembl-Gn; ENSG00000235220; homo_sapiens.
DR   Ensembl-Gn; ENSG00000237508; homo_sapiens.
DR   Ensembl-Tr; ENST00000259951; homo_sapiens.
DR   Ensembl-Tr; ENST00000334668; homo_sapiens.
DR   Ensembl-Tr; ENST00000359076; homo_sapiens.
DR   Ensembl-Tr; ENST00000376848; homo_sapiens.
DR   Ensembl-Tr; ENST00000376861; homo_sapiens.
DR   Ensembl-Tr; ENST00000383515; homo_sapiens.
DR   Ensembl-Tr; ENST00000420067; homo_sapiens.
DR   Ensembl-Tr; ENST00000434407; homo_sapiens.
DR   Ensembl-Tr; ENST00000440590; homo_sapiens.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..6998
FT                   /organism="Homo sapiens"
FT                   /chromosome="6"
FT                   /mol_type="genomic DNA"
FT                   /clone="SCHU"
FT                   /db_xref="taxon:9606"
FT   gap             997..1364
FT                   /estimated_length=368
FT   gene            <1943..>4886
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*new1"
FT   mRNA            join(<1943..2006,2137..2406,2652..2927,3510..3785,
FT                   3926..4042,4490..4522,4882..>4886)
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*new1"
FT                   /product="MHC class Ib antigen"
FT   CDS             join(1943..2006,2137..2406,2652..2927,3510..3785,
FT                   3926..4042,4490..4522,4882..4886)
FT                   /codon_start=1
FT                   /gene="HLA-F"
FT                   /allele="HLA-F*new1"
FT                   /product="MHC class Ib antigen"
FT                   /db_xref="GOA:P30511"
FT                   /db_xref="HGNC:HGNC:4963"
FT                   /db_xref="IMGT/HLA:F*01:03:01:01"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR027648"
FT                   /db_xref="UniProtKB/Swiss-Prot:P30511"
FT                   /protein_id="AAM74979.1"
FT                   /translation="MAPRSLLLLLSGALALTDTWAGSHSLRYFSTAVSRPGRGEPRYIA
FT                   VEYVDDTQFLRFDSDAAIPRMEPREPWVEQEGPQYWEWTTGYAKANAQTDRVALRNLLR
FT                   RYNQSEAGSHTLQGMNGCDMGPDGRLLRGYHQHAYDGKDYISLNEDLRSWTAADTVAQI
FT                   TQRFYEAEEYAEEFRTYLEGECLELLRRYLENGKETLQRADPPKAHVAHHPISDHEATL
FT                   RCWALGFYPAEITLTWQRDGEEQTQDTELVETRPAGDGTFQKWAAVVVPPGEEQRYTCH
FT                   VQHEGLPQPLILRWEQSPQPTIPIVGIVAGLVVLGAVVTGAVVAAVMWRKKSSDRNRGS
FT                   YSQAAV"
XX
SQ   Sequence 6998 BP; 1555 A; 1671 C; 1783 G; 1621 T; 368 other;
     ggtaatggaa cagtgctaga gccactattc aggagtgaca gagtggtggg gactaaggga        60
     agaggagggc ctgagggatg agagggacgg agggaagggc tggagaagca ggaggtgagg       120
     agaaggagca gagggacaga atttgaaagc agcagaattc ttagctttaa acacattgtt       180
     ttataaattt ttaaacacat tgttttataa atttttaata catccatcta cagagcctag       240
     cagggtgttc cttgcatttg gcctttaaca ccttatgtgg gactgcctaa aaattaattg       300
     ctttttctgc tttttttcag gtttaaaaaa atactaagtg ttccaataaa acatgcacac       360
     cacttagatg cggatacttc ctaaaaacag gaagtgcatg agcactggtg aggggcattg       420
     tgactgcgtt gaacacttgc aactttgagg tgaatgaatg tattggctcc tggttgcaat       480
     atacaatcac acgttgtgct actttgtatt gtcaggagat gtcctggact cccacagaaa       540
     ctcagggcta tggaatgaag gtaattttag aatacaacaa gagtcacaga tacatagtct       600
     gggaaagcaa aacttaggag ctctgagagt tgtacaactg taatgcattt agacacattt       660
     atatatcaag gggccaaagt aacagttttt acacataaga ttcctgattg gtcgggcgcg       720
     gtggctcatg cctgtaatcg cagcactttg ggaggccgag gcgggaggat cacgaggtca       780
     ggagatcgag accatcctgg ctaacacggt gaaacccgtc tctacaaaaa aattagccgg       840
     gcgtggtggc gggcatctgt agtctcagct actcgggagg ctgaagcaga agaatggcgt       900
     gaacccggga cgcagagctt gcagtgagcc gagatcgcgc cactgcactc cagcctgggc       960
     ggcagagaga gactccgtct caaaaaaaaa aaaaaannnn nnnnnnnnnn nnnnnnnnnn      1020
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1080
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1140
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1200
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1260
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn      1320
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnngaagaa gaggaagaag      1380
     aagaaactgt ctctacacct tcattctcag gacaagttca ttgtctggca ccaagctcct      1440
     tggggtgaat tttcttccaa aagagtccgg ggagtccagg tatggaatgg gaggcagaaa      1500
     gttcaatcaa gggactggga tttcggaatg aataatgaag ggagatggac tgggtccatg      1560
     ccgaaggttt ctccctggtt tctcagcccc cgggcgaaga ctcagggaga cattgagaca      1620
     caccctgcac aggaggggga gggggagggg gagggcaaag tcccagggcc ccaggagtgg      1680
     ctctcaaggg ctcaggcccc gaggcggtgt ctggggttgg gaggctcagt attgagaatt      1740
     ccccatctcc ccagagtttc tctttctctc ccaacccgtg tcaggtcctt cttcctggat      1800
     actcataacg cggccccatt tctcactccc attgggcgtc gcgtttctag agaagccaat      1860
     cagtgtcgcc gcagttccca ggttctaaag tcccacgcac cccgcgggac tcatattttt      1920
     cccagacgcg gaggttgggg tcatggcgcc ccgaagcctc ctcctgctgc tctcaggggc      1980
     cctggccctg accgatactt gggcgggtga gtgcggggtc cagagagaaa cggcctctgt      2040
     ggggaggagt gaggggcccg cccggtgggg gcgcaggact cagggagccg cctccggagg      2100
     agggtctggc gggtctcagc ccctcctcgc ccccaggctc ccactccttg aggtatttca      2160
     gcaccgctgt gtcgcggccc ggccgcgggg agccccgcta catcgccgtg gagtacgtag      2220
     acgacacgca attcctgcgg ttcgacagcg acgccgcgat tccgaggatg gagccgcggg      2280
     agccgtgggt ggagcaagag gggccgcagt attgggagtg gaccacaggg tacgccaagg      2340
     ccaacgcaca gactgaccga gtggccctga ggaacctgct ccgccgctac aaccagagcg      2400
     aggctggtga gtgaacccgg ccgggggcgc aggtcacgac caccccccat ccgccacgga      2460
     ccgcccgggt ccctcagagt ctccggatcc gaaatctacc ccgaggcagc gggacccgcc      2520
     cagaccctcc acccgggaga gtcccaggcg cctttaccca ggttcatttt cagtttaggc      2580
     caaaatcccc gcgggttggg cggggagggg gcggggctag ctgggcgggg ctgactgcgg      2640
     ggaccggcta gggtctcaca ccctccaggg aatgaatggc tgcgacatgg ggcccgacgg      2700
     acgcctcctc cgcgggtatc accagcacgc gtacgacggc aaggattaca tctccctgaa      2760
     cgaggacctg cgctcctgga ccgcggcgga caccgtggct cagatcaccc agcgcttcta      2820
     tgaggcagag gaatatgcag aggagttcag gacctacctg gagggcgagt gcctggagtt      2880
     gctccgcaga tacttggaga atgggaagga gacgctacag cgcgcaggta ccaggggcca      2940
     tgggcgcctt ccctatctcc tgtagatctc ttgggatggc ctcgcacaag gttgggagga      3000
     aagtggaccc aatgctagga tatcgccctc cctctagtcc tgagtaggaa gaatcttcct      3060
     ggctttcgag atccggtacc agagagtgac tgtgagagtc cgccctgctc tctgggacaa      3120
     ttaagggatg aaatttctga gggaatggag ggaagacagt ccctggaata ccgatccgcg      3180
     gtcccctttg agccctccaa cagccttggg ccccgtgact tttctctcaa gttttgttct      3240
     ctgcctcaca ctcaatgtgt ttgaggctct gattccagtc cctcggcctc cacttaggtc      3300
     agggccagaa gtccctgctc ccccctcaga gactctaact ttccaaggaa taggagattt      3360
     tcccaggtgt ctgtgtccag gctggtgtct gggttctgtg ctcccttccc caccccaggt      3420
     gtcctgtcca ttctcaggtt ggtcacatgg gtgctgctgg ggtttcccat gaggagtgca      3480
     aagtgcctga attttctgac tcttctcaga tcctccaaag gcacacgttg cccaccaccc      3540
     catctctgac catgaggcca ccctgaggtg ctgggccctg ggcttctacc ctgcggagat      3600
     cacgctgacc tggcagcggg atggggagga acagacccag gacacagagc ttgtggagac      3660
     caggcctgca ggggatggaa ccttccagaa gtgggccgct gtggtggtgc ctcctggaga      3720
     ggaacagaga tacacatgcc atgtgcagca cgaggggctg ccccagcccc tcatcctgag      3780
     atggggtaag gagggagatg ggtaaagagg ggaacgaggg gtcatgtctt ttctcaggga      3840
     aagcaggagc ccttctggag ctcttcagca gggtcagggc tgaggcctgg agatcagggc      3900
     ccctcacctt cccttccttt cccagagcag tctccccagc ccaccatccc catcgtgggc      3960
     atcgttgctg gccttgttgt ccttggagct gtggtcactg gagctgtggt cgctgctgtg      4020
     atgtggagga agaagagctc aggtaggaag gggtgaggag tggagtctga gttttcttgt      4080
     cccactgggg gttgcaagcc ccaagtagaa gtgtgccctg cctcattact gggaagcacc      4140
     atccacactc atgggtctac ccagcctggg ccctgtgtgc cagcacctac tcatttgtaa      4200
     agctcctgtg aaaatgaagg acagattctt cacttcgatg attatggtgg tgatgggacc      4260
     tgatcccagc agtcacaaat cacaggggaa ggtccctgct gatgacagac ctcaggaggg      4320
     cagttggtcc aggacccaca tctgctttct tcatatttct tgatcctgcc ctggatctac      4380
     agttacactt ttctggaaac ttctctggga tcaaagacta ggggtttgct ctaggacctt      4440
     atggccctgc ctcctttctg gcctctcaca ggacattttc ttcccataga tagaaacaga      4500
     gggagctact ctcaggctgc aggtaagatg aaggaggctg atccctgaga ttgttgggat      4560
     attgtggtca ggagcctatg agggagctca cccaccccac agttcctcta gccacatctg      4620
     tgggctctga ccaggtcctg tttttgttct accccaatca ctgacagtgc ccagggctct      4680
     ggggtgtctc tcacagctaa taaaggtgac actccagggc aggggccctg atgtgagtgg      4740
     ggtgttgggg gggaacagag gggactcagc tgtgctattg ggtttctttg acttggatgt      4800
     cttgagcatg aaatgggcta tttagagtgt tacctctcac tgtgactgat acgaatttgt      4860
     tcatgaatat tttctctata gtgtgagaca gcttccttgt gtgggactga gaagcaagat      4920
     atcaatgtag cagaattgca cttgtgcctc acgaacatac ataaatttta aaaataaaga      4980
     ataaaaatat atctttttat agatacaggt agatatgttt ttatagcatg cacgtaaatg      5040
     tgtgtgtgtg tgtgtgtgtg tgaagagaaa gagtgaatag agagattaag attcttttaa      5100
     tggtgaaaag atatacatat atttggaact agccagcttg actcagttta ggtgatccca      5160
     attttggtgg caacaaccaa agcatcgtag tcaggagcca gtcgaacata tgccttcctc      5220
     tctccatcag actgaatcag agtgttgact ttggccacat caatgtcaca aacttcttca      5280
     cagcctgttt gatctggtgc ttgttggctt taacatccac agtgaacaca agtaggctgt      5340
     tgttttctat cttcttcaca gcctactcag tggtcagcgg aaacttgatg ataacatggt      5400
     ggtcaagctt atttctcctg ggggtgctct tccaaggata tttgggctgc ctccggagtc      5460
     acagtgtctt gggccgccgg aaggtgggtg acatgtggat cttgtttttt ttgtggctgt      5520
     ggacatcttt caacactgcc ttcttggcct tgcaaagcct tcgctttggc ttcggcttta      5580
     ggaggggcag gagcttcctt cttcgttctt ggcaccatct tatgaaaagg gtccagatta      5640
     agatttttga ctgagtcatt ctaaagtaag ttgcaagacc catgatacta gaccactaaa      5700
     tacttcatca cacacctcct aagaataaga accaacatta tcacaccaaa gaaaataaat      5760
     aattccataa tattatttaa agtcctttta tgttcaaata tctccacttc tttcagtaca      5820
     tttttgtacc tattttttat agcttgtttt cttaaaatgt ccactcgttg cctttggtta      5880
     tgtttcttta attacctaca atctataaca atcaacccat cttttttctt ttagaatggc      5940
     attacctgtt tcagagatga ggccaaatac ctgtggaatc ttctccacac tgaatttatc      6000
     atattatttc ccctgatgcc tttaactttt ttcctctaac tgctatgcct cctaaggacc      6060
     tatgtagctc tgggttaaac atttggcagc aatgtttaca ggaggagctg tgaccgcaca      6120
     ttcatcacat caggaggcac acaaagccta gggttaccag gactctttct gaccccatac      6180
     agccaaattt atcctgactt cccagagatg cagaaccatg ggctgggtgt ttagtgggta      6240
     tgagtgtgat attctggcaa taggaggttc tgccactctc cccattcctc acgagcttta      6300
     gttccccata ccctgaggtt ctgagctcca gaccttcaac catcaggcca ggcccctcca      6360
     gacctagact cccttcctgt cttctccagc cccactctgc tttgtatcta cttccggatc      6420
     actttccctc tacaggccca gctcctgagt gtctctacct ctcaaacaag tattctcatc      6480
     caggagcaat tttcccacca gaggacatta gctatgtctg gaaaaatgtt ttgttgccat      6540
     gactggagtg aggaggaggt gctaccagca tcttgtgggg aatgaccagg gatgctgaac      6600
     atcctgcagt gcacaagtca gcccaatcac ccacataaca gataattatc cagccccaat      6660
     accaagattg ccaagggtaa ggaggcctgc caggactttc tctcccttga gtacaagctt      6720
     ccttgaactg agggacaccc tgaaggaaaa gtgtggtccc accccagtca tctctccctt      6780
     ccctggagct ccatctgtat gcctgtagtg cttaggcctg taacctgggg tccaggaacc      6840
     caccttccca tgagactgca tgcagaagtg atgatatgtg cacacatgac ttcattacag      6900
     ggcattggat gttgatattc atcaggtcag ctggggccca agacactact cttctgccaa      6960
     caggccgcaa tcctctgcat tagagagagg gtaaagat                              6998
//


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