Dbfetch

Dbfetch

ID   AF504019; SV 1; linear; mRNA; STD; VRT; 1748 BP.
XX
AC   AF504019; L07606;
XX
DT   27-NOV-2002 (Rel. 73, Created)
DT   27-NOV-2002 (Rel. 73, Last updated, Version 1)
XX
DE   Salmo salar MHC class I (UBA) mRNA, UBA*0101 allele, complete cds.
XX
KW   .
XX
OS   Salmo salar (Atlantic salmon)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC   Salmonidae; Salmoninae; Salmo.
XX
RN   [1]
RP   1-1748
RX   DOI; 10.1007/BF00222473.
RX   PUBMED; 8436423.
RA   Grimholt U., Hordvik I., Fosse V.M., Olsaker I., Endresen C., Lie O.;
RT   "Molecular cloning of major histocompatibility complex class I cDNAs from
RT   Atlantic salmon (Salmo salar)";
RL   Immunogenetics 37(6):469-473(1993).
XX
RN   [2]
RP   1-1748
RX   DOI; 10.1007/s00251-002-0499-8.
RX   PUBMED; 12439620.
RA   Grimholt U., Drablos F., Jorgensen S.M., Hoyheim B., Stet R.J.M.;
RT   "The major histocompatibility class I locus in Atlantic salmon (Salmo salar
RT   L.): polymorphism, linkage analysis and protein modelling";
RL   Immunogenetics 54(8):570-581(2002).
XX
RN   [3]
RP   1-1748
RA   Grimholt U.;
RT   ;
RL   Submitted (19-APR-2002) to the INSDC.
RL   Morphology, Genetics and Aquatic Biology, Norwegian School of Veterinary
RL   Science, P.O.Box 8146 Dep., Oslo 0033, Norway
XX
DR   MD5; 95e593d4d8211c45069f84b7e2bd3ab7.
DR   EuropePMC; PMC1150808; 15939887.
DR   EuropePMC; PMC3036124; 21637434.
DR   EuropePMC; PMC3646885; 23667568.
DR   IMGT/LIGM; AF504019.
XX
CC   On Nov 27, 2002 this sequence version replaced gi:213822.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1748
FT                   /organism="Salmo salar"
FT                   /isolate="p30"
FT                   /mol_type="mRNA"
FT                   /tissue_type="leukocyte"
FT                   /db_xref="taxon:8030"
FT   CDS             1..1071
FT                   /codon_start=1
FT                   /gene="UBA"
FT                   /product="MHC class I"
FT                   /db_xref="GOA:Q31594"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:Q31594"
FT                   /protein_id="AAN75113.1"
FT                   /translation="MKGFILLVLGIGLLHTASAVTHALKYFYTASSEVPNFPEFVVVGV
FT                   VDGVQMVHYDSNSQRAVPKQDWVNKAADPQYWERNTGIFKGSQQTFKANIDIAKQRFNQ
FT                   SGGVHVNQWMYGCEWDDEAGVTEGFEQWGYDGEDFIAFDLKTKSWIAPTPQSVITKLKW
FT                   DSDTAQNEHDKHYLTQTCIEWLKKYLDYGKSTLMRTVPPSVSLLQKTPSSPVTCHATGF
FT                   YPSGVMVSWQKDGQDHHEDVEYGETLQNDDGTFQKSSHLTVTPEEWKNNKYQCVVQVTG
FT                   VKEDFIKVLTESEIKTNWNEPNIVLIIVVVVALLLLVVAVVVGVVIWKKKSKKGFVPAS
FT                   TSDTDSDNSGRAAQMT"
FT   3'UTR           1072..1748
FT                   /gene="UBA"
XX
SQ   Sequence 1748 BP; 503 A; 375 C; 416 G; 453 T; 1 other;
     atgaaaggtt ttatcttgct ggtgctggga ataggccttc tacatacagc atctgctgtg        60
     actcacgccc tgaagtattt ctacaccgca tcttctgaag ttcccaactt cccagagttt       120
     gtagttgtgg gggtggtgga tggtgttcag atggttcact atgacagcaa cagccagaga       180
     gcggtgccca aacaggactg ggtaaacaag gcagcagacc cacagtactg ggagaggaac       240
     actgggattt tcaagggttc ccagcagact ttcaaagcca acatcgatat tgcaaagcag       300
     cgttttaacc aaagtggagg tgtgcacgtt aaccagtgga tgtatggatg tgagtgggat       360
     gatgaggctg gagtcacaga ggggtttgaa cagtggggat atgatggaga ggacttcata       420
     gcatttgacc tgaagacaaa gtcatggatc gccccaacgc cacagtcagt catcaccaaa       480
     ctcaagtggg acagtgacac agctcagaat gagcacgata aacattacct cacccagacc       540
     tgcattgagt ggctgaagaa gtatctggac tatgggaaga gcactctgat gaggacagtc       600
     cctccgtcag tgtctctgct ccagaagacc ccctcctctc cagtgacctg ccacgcgaca       660
     ggtttctacc ccagtggagt catggtgtcc tggcagaaag acggacaaga tcaccatgaa       720
     gatgtggagt acggagagac tctccagaac gatgacggaa ccttccagaa aagctcccac       780
     ctgacagtga cacctgagga gtggaagaac aacaagtatc agtgtgtggt tcaagtcacg       840
     ggtgtcaagg aggacttcat caaggttctg actgagtctg agatcaagac caactggaat       900
     gagcccaaca ttgtcctcat cattgtagtg gtggtagctc tcctcctgct cgtcgttgct       960
     gttgttgttg gggtcgtcat ttggaagaag aagagcaaga aaggctttgt tccggccagc      1020
     acttccgaca ctgactctga caactctggg agagctgccc agatgacttg agagacctct      1080
     ctgctcttct gtagcatcag agaaggtgct gaagaggaac gtctcaagaa cataacacac      1140
     gtatacttgc acacacacac acacacacac acacacacac acaacacagg aggttggtgc      1200
     caccttaatt gggtcgagcg ggcttgtggt aattgctaga gcggaatggt accaaataca      1260
     tcaacatagt ttgatctact ccgttccagc cattattatg atctgtcctc ccctcagcag      1320
     cctcctgtga cacacacact gtaaacacag atccatacat caacaaaaaa aatcgtctgt      1380
     caaaaatatt atttggtgat tttcatttga acagttttac tttcatttaa tctatagttt      1440
     ggctttttaa agtgttgtaa tgtgttttga attgttaaat gttatattgc cactgtgtga      1500
     ggtttatctc gttcttacca ggtatactag aatcaatgga aaggattaga ttgttgtgag      1560
     atgttaaatt aagattttaa cttagattat tctacaaata aaacataaat ttgcttgatt      1620
     ttctcttaac tgaagccatc aaaacaacca catttaaaag atattgctgt aaaccggaaa      1680
     aacaacatta ttttgtgtag tgtagctgca catgtgtagg ttttngtggg ataacagagt      1740
     aattgtgt                                                               1748
//