ID AF464024; SV 1; linear; mRNA; STD; MAM; 1092 BP.
XX
AC AF464024;
XX
DT 03-MAY-2002 (Rel. 71, Created)
DT 23-NOV-2005 (Rel. 85, Last updated, Version 3)
XX
DE Sus scrofa MHC class II antigen (SLA-DQB) mRNA, SLA-DQB*ax allele, complete
DE cds.
XX
KW .
XX
OS Sus scrofa (pig)
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus.
XX
RN [1]
RP 1-1092
RX DOI; 10.1111/j.1399-0039.2005.00337.x.
RX PUBMED; 15713212.
RA Smith D.M., Lunney J.K., Martens G.W., Ando A., Lee J.H., Ho C.S.,
RA Schook L., Renard C., Chardon P.;
RT "Nomenclature for factors of the SLA class-I system, 2004";
RL Tissue Antigens 65(2):136-149(2005).
XX
RN [2]
RP 1-1092
RA Martens G.W., Baker J.E., Smith D.M.;
RT "Rapid Assignment of Swine Leukocyte Antigen (SLA) Haplotypes in Pedigreed
RT Herds with the Polymerase Chain Reaction";
RL Unpublished.
XX
RN [3]
RP 1-1092
RA Martens G.W., Baker J.E., Smith D.M.;
RT ;
RL Submitted (27-DEC-2001) to the INSDC.
RL Pathology - Transplant Immunology Lab, Baylor University Medical Center,
RL 3500 Gaston Ave., Dallas, TX 75246, USA
XX
DR MD5; bf878ca78ce0c4ccb6047f865f8a3305.
DR Ensembl-Gn; ENSSSCG00000001457; sus_scrofa.
DR Ensembl-Tr; ENSSSCT00000001617; sus_scrofa.
XX
FH Key Location/Qualifiers
FH
FT source 1..1092
FT /organism="Sus scrofa"
FT /chromosome="7"
FT /mol_type="mRNA"
FT /haplotype="a"
FT /note="breed: NIH"
FT /db_xref="taxon:9823"
FT gene 1..1092
FT /gene="SLA-DQB"
FT /allele="SLA-DQB*ax"
FT /note="this allele also found in the x haplotype of the
FT Yucatan breed deposited in GenBank Accession Number
FT AF464028"
FT CDS 26..811
FT /codon_start=1
FT /gene="SLA-DQB"
FT /allele="SLA-DQB*ax"
FT /product="MHC class II antigen"
FT /db_xref="GOA:Q8MGP9"
FT /db_xref="InterPro:IPR000353"
FT /db_xref="InterPro:IPR003006"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="InterPro:IPR014745"
FT /db_xref="InterPro:IPR036179"
FT /db_xref="UniProtKB/TrEMBL:Q8MGP9"
FT /protein_id="AAM20963.1"
FT /translation="MSGMVALRLPRGLWTAALTVMLVVLGAPVAEGRDSPQDFVYQFKF
FT ECYFFNGTQRVRGVARWVYNQEEHVRFDSDVGEFRAVTPLGRPTADYWNGQKDVLEQKR
FT AEVDTVCKHNYQIEEGTTLQRRVQPTVTISPSKAEALNHHNLLVCAVTDFYPSQVKVQW
FT FRNGQEETAGVVSTPLIRNGDWTYQVLVMLEMNLQRGDVYTCRVEHSSLQNPILVEWRA
FT QSESAQSKMLSGVGGFVLGLIFLGLGLFIRHRSQKGLVR"
XX
SQ Sequence 1092 BP; 210 A; 306 C; 328 G; 248 T; 0 other;
attacttctt cgtttgtcct caattatgtc tgggatggtg gctctgcggc tccccagagg 60
cctttggaca gcggccttga cggtgatgct ggtggtgctg ggtgctccag tggctgaggg 120
cagagactct ccacaggatt tcgtgtacca gtttaagttc gagtgctact tcttcaacgg 180
aacgcagcgg gtgcggggcg tggccaggtg ggtctacaac caggaggagc acgtgcgctt 240
cgacagcgac gtgggggagt tccgggcggt gaccccgctg gggcggccga ccgccgacta 300
ctggaacggc cagaaggacg tcctggagca gaagcgggcc gaggtggaca cggtgtgcaa 360
acacaactac cagatagagg aaggcacgac cctgcagcgg cgagtgcaac ctacagtgac 420
tatctcccca tccaaggcag aggctctaaa ccaccacaac ctgctggtct gtgcggtgac 480
agatttctat ccaagccagg tgaaagtcca gtggttccgg aatggccagg aggagacagc 540
tggcgttgtg tccactcctc ttattaggaa cggagactgg acctaccagg tgctcgtgat 600
gctagagatg aatctccagc gaggagatgt ctacacctgc cgcgtggagc actccagcct 660
ccagaacccc atcttggtgg agtggcgggc acagtctgaa tctgcccaga gcaagatgct 720
gagcggtgtc gggggcttcg tgctggggct gatcttcctc gggctgggcc ttttcatccg 780
tcacaggagt cagaaggggc tcgtgcgctg aatcctgaag atactttggg gttggttttt 840
gctcttctta aatgcctgtc tgttcttgcc tggaattccc atcccccctg ccagcttgtc 900
ctctctgagg tcagatccta cagtgactct gatgcagtca ccagggcgct tcctgtgatc 960
cccacctcaa ggctctggct gtgaagcttc ttcctgaact gaccccagcg cctctgcctg 1020
agtgcagcca gctgtgtcta ctcagaccac aagggatttt cctgttccta tttcccctca 1080
acagactgtg ca 1092
//