Dbfetch

Dbfetch

ID   AF296374; SV 1; linear; mRNA; STD; VRT; 1071 BP.
XX
AC   AF296374;
XX
DT   30-AUG-2000 (Rel. 64, Created)
DT   28-FEB-2001 (Rel. 66, Last updated, Version 2)
XX
DE   Salmo trutta MHC class I heavy chain (Satr-UBA) mRNA, Satr-UBA*0101 allele,
DE   partial cds.
XX
KW   .
XX
OS   Salmo trutta (river trout)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC   Salmonidae; Salmoninae; Salmo.
XX
RN   [1]
RP   1-1071
RX   PUBMED; 11207285.
RA   Shum B.P., Guethlein L., Flodin L.R., Adkison M.A., Hedrick R.P.,
RA   Nehring R.B., Stet R.J.M., Secombes C., Parham P.;
RT   "Modes of salmonid MHC class I and II evolution differ from the primate
RT   paradigm";
RL   J. Immunol. 166(5):3297-3308(2001).
XX
RN   [2]
RP   1-1071
RA   Shum B.P.;
RT   ;
RL   Submitted (17-AUG-2000) to the INSDC.
RL   Structural Biology, Stanford University School of Medicine, 299 Campus
RL   Drive West, Sherman Fairchild Building, Room D-151, Stanford, CA
RL   94305-5126, USA
XX
DR   MD5; 2314861656ad3cadd3a5ccbc277a96c3.
DR   EuropePMC; PMC3646885; 23667568.
DR   IMGT/LIGM; AF296374.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1071
FT                   /organism="Salmo trutta"
FT                   /mol_type="mRNA"
FT                   /tissue_type="spleen"
FT                   /db_xref="taxon:8032"
FT   CDS             <1..1027
FT                   /codon_start=2
FT                   /gene="Satr-UBA"
FT                   /product="MHC class I heavy chain"
FT                   /db_xref="GOA:Q9GJK2"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:Q9GJK2"
FT                   /protein_id="AAG02520.1"
FT                   /translation="GLLHTTSAVTHSLKYFYTASSEVANFPEFVAVGMVDGVQMFHYDS
FT                   NSQRAVPKQDWMNKATETLPQYWERETGNCKGSQQNFKANIDIVQQRFNQSGGVHVFQN
FT                   MYGCEWDDEAGVTEGFYQFGYDGKDFIAFDLKTLKWTAPTPQAVITKLKWDSNMAFNEQ
FT                   KKNYLTQICIEWLKKYVDYGKSTLMRTVPPSVSLLQKTPSSPVTCHATGFYPSDVMVSW
FT                   QKDGQDHHEDVEYGETLPNDDGTFQKSIRLTVTPEEWKNSKYQCVVQVKGLKEDFIKVL
FT                   TDSDATNIVPIIGGVVALLLLIVAVVVGVVIWKKKSKKGFVPTSTSDTDSDNSGRAPQM
FT                   T"
XX
SQ   Sequence 1071 BP; 292 A; 250 C; 283 G; 246 T; 0 other;
     aggccttctt catacaacat ctgctgtgac tcactccctg aagtatttct acaccgcatc        60
     ttctgaagtt gccaacttcc cagagtttgt ggctgtgggg atggtggatg gtgttcagat       120
     gtttcactat gacagcaaca gccagagagc ggtgcccaaa caggactgga tgaacaaggc       180
     gacagaaaca ctgccacagt actgggagag ggagacaggg aattgcaagg gttcccagca       240
     gaatttcaaa gccaacatcg atattgtaca gcagcgtttt aaccaaagtg gaggtgtgca       300
     cgttttccag aatatgtatg gatgtgagtg ggatgatgag gctggagtca cagaggggtt       360
     ttatcagttt ggatatgatg gaaaggattt catagcattt gacctgaaga cattgaaatg       420
     gaccgctcca acgccacagg cagtcatcac caaactcaag tgggacagta acatggcttt       480
     caatgagcag aaaaaaaact acctcactca gatctgcatt gagtggctga agaagtacgt       540
     ggactatggg aagagcactc tgatgaggac agtccccccc tctgtgtctc tgctccagaa       600
     gaccccctcc tctccagtga cctgccacgc tacaggtttc taccccagtg atgtcatggt       660
     gtcctggcag aaagacggac aagatcacca tgaagatgta gagtacggag agactctccc       720
     caacgatgat ggaaccttcc agaaaagcat ccgcctgaca gtgacgcctg aggagtggaa       780
     gaacagcaag tatcagtgtg tggttcaagt caagggtctc aaggaggact tcatcaaggt       840
     tctgactgac tcggatgcca ccaacattgt ccccatcatt ggaggagtgg tagctctcct       900
     cctgctcatc gttgctgttg ttgttggggt cgtcatttgg aagaagaaga gcaagaaagg       960
     ctttgttccg accagcactt ccgacactga ctctgacaac tctgggagag ctccccagat      1020
     gacttgagag acctctctgc tcttctgtag catcagagaa ggagctgaag a               1071
//