Dbfetch

Dbfetch

ID   AF220063; SV 1; linear; mRNA; STD; VRT; 1828 BP.
XX
AC   AF220063;
XX
DT   28-APR-2000 (Rel. 63, Created)
DT   15-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE   Ginglymostoma cirratum MHC class I protein (Gici-UAA01) mRNA, complete cds.
XX
KW   .
XX
OS   Ginglymostoma cirratum (nurse shark)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes;
OC   Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes;
OC   Ginglymostomatidae; Ginglymostoma.
XX
RN   [1]
RP   1-1828
RX   DOI; 10.1073/pnas.97.9.4712.
RX   PUBMED; 10781076.
RA   Ohta Y., Okamura K., McKinney E.C., Bartl S., Hashimoto K., Flajnik M.F.;
RT   "Primitive synteny of vertebrate major histocompatibility complex class I
RT   and class II genes";
RL   Proc. Natl. Acad. Sci. U.S.A. 97(9):4712-4717(2000).
XX
RN   [2]
RP   1-1828
RA   Ohta Y., Flajnik M.F., Haliniewski D.E., Bartl S.;
RT   ;
RL   Submitted (29-DEC-1999) to the INSDC.
RL   Microbiology and Immunology, Univ. of Maryland, 655 W. Baltimore St.,
RL   Baltimore, MD 21201, USA
XX
DR   MD5; ba5acb59c2544c1fa1be625bbc29f50d.
DR   EuropePMC; PMC18298; 10781076.
DR   EuropePMC; PMC2998441; 21151886.
DR   IMGT/LIGM; AF220063.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1828
FT                   /organism="Ginglymostoma cirratum"
FT                   /mol_type="mRNA"
FT                   /tissue_type="spleen"
FT                   /db_xref="taxon:7801"
FT   CDS             75..1109
FT                   /codon_start=1
FT                   /gene="Gici-UAA01"
FT                   /product="MHC class I protein"
FT                   /db_xref="GOA:Q9MX69"
FT                   /db_xref="InterPro:IPR001039"
FT                   /db_xref="InterPro:IPR003006"
FT                   /db_xref="InterPro:IPR003597"
FT                   /db_xref="InterPro:IPR007110"
FT                   /db_xref="InterPro:IPR011161"
FT                   /db_xref="InterPro:IPR011162"
FT                   /db_xref="InterPro:IPR013783"
FT                   /db_xref="InterPro:IPR036179"
FT                   /db_xref="InterPro:IPR037055"
FT                   /db_xref="UniProtKB/TrEMBL:Q9MX69"
FT                   /protein_id="AAF66110.1"
FT                   /translation="MLSVILLGLLCGGASAGSHSLRYFFTWSTAGSGIPEFVAVGYVDD
FT                   QQFVQYDSDRKEMIPRQRWVKESEGPEYWERETQTLRGWEPWGKANIDILSKRTNQTGG
FT                   IHTYQLMCGCELRDDGSSNTGFVQHAWDSTDFISLDKDKMVWVTPVTWGEITKNKWDRD
FT                   MAFNQGTKGYLEGICIEWLQKYLKNGNVELRPVKPSVTFTSVRGNKQLSCVATGFYPHS
FT                   IEVNLFRDSAKIDETESTGVRPNHDGSYQIHRSTEFDPNSQAKYSCVVDHDGLGQQLVV
FT                   FYEPKTSSMLPVIIGVVVVIVLVIIAVIAGVVWYKKKAGQKTGYNPAKTSDKGDSSSSS
FT                   LATA"
XX
SQ   Sequence 1828 BP; 459 A; 407 C; 517 G; 445 T; 0 other;
     ctccagtaca agatcatctg ttccaaaagc agtgactaca gaccattcct caaactccaa        60
     gcgggcagac agcaatgtta agcgtcatac tactcggcct cctgtgtgga ggggcatctg       120
     cagggtctca cagtctccgg tattttttca cctggagcac cgccgggtcg gggatcccgg       180
     agtttgtggc ggtcggttat gtggatgatc agcagtttgt tcagtacgac agcgatcgga       240
     aggagatgat cccccggcag cgctgggtga aggagagtga gggaccggag tattgggagc       300
     gggagacaca gaccctgcgg ggctgggagc cgtggggaaa ggccaacatc gacatcctga       360
     gcaaacggac caaccagacc ggggggatcc acacctacca gctgatgtgc ggctgtgagc       420
     tccgggacga tggcagcagc aacacggggt ttgtacagca cgcctgggac agcaccgact       480
     tcatcagctt ggacaaggac aagatggtgt gggtcacccc cgtcacctgg ggggagatca       540
     ccaaaaacaa gtgggaccgg gatatggcat ttaaccaggg gacgaagggt tacctggagg       600
     gaatctgtat cgagtggctg caaaaatacc ttaaaaacgg aaatgtggaa ctgagaccag       660
     tcaaaccctc tgtgacgttt acctctgtga gggggaataa acagctctcc tgtgtcgcca       720
     ctgggttcta ccctcattcc attgaagtga atctgttccg cgacagtgcg aagatcgatg       780
     agacagaatc cactggagtc cgccccaatc atgatggatc ctaccagatc cacagatcca       840
     cggagtttga tccgaattcc caggccaagt actcctgtgt ggtggatcac gatggattgg       900
     ggcagcagct ggttgtgttt tatgaaccaa agaccagctc catgctcccg gtcataattg       960
     gtgtcgttgt cgttatcgtc ctggtgatta ttgcggtcat cgctggggtt gtctggtaca      1020
     aaaagaaagc aggccagaag acaggctaca acccagcaaa aacttctgat aaaggggact      1080
     cctcttcaag ctcccttgcc actgcttaga gcggcttctc atgtcccaca catattcctg      1140
     ggatttcagt cagcaagttg gcaagaggaa ttgatgaaga attggggaat tccggggtgg      1200
     gggggttggt ttacatgaat aagagagtgg gagaatcttg attgtaaatt tgttcgctct      1260
     atttagcaaa cctgctgatt taagctttga tttgcactga tctccgtact gactttggga      1320
     aacagcttca tttattcact tcaatctggg ccgtgttttc attgttgtat tgtaacaggt      1380
     aaagctcttt cgttatcact gggctgaagg gaagggactc aacgggagaa tgaccctgag      1440
     cttcagctca ctcacattct ggctgcaatg tcagatacat tccctggttc tggaggttca      1500
     tgtccactca atccaaccag cccttcatgg gccagccctc cagatagctg gggggtcggg      1560
     gaggggtgct gattcctgag accttcaatc ccagtcgatg gggggctata gctgataggg      1620
     cctgctttgt gtaattgttc ggggtcagag ggaagtgttt gattatttgg gggttggggg      1680
     gatgggagaa tgattagatt tattaatttt tgacgatggg tgaagggaga agcttcgttc      1740
     tacgttatat ctccgtctgt aatactatga ttcctaaaac ttaaacaata aattgggttt      1800
     ggaatccaca aaaaaaaaaa aaaaaaaa                                         1828
//