Dbfetch
ID AF218783; SV 1; linear; genomic DNA; STD; VRT; 2507 BP. XX AC AF218783; XX DT 09-MAR-2001 (Rel. 67, Created) DT 15-APR-2005 (Rel. 83, Last updated, Version 3) XX DE Gallus gallus MHC Rfp-Y class I alpha chain (YFV) gene, YFV-Y-FVw*7 allele, DE complete cds. XX KW . XX OS Gallus gallus (chicken) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; OC Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; OC Phasianinae; Gallus. XX RN [1] RP 1-2507 RX PUBMED; 3141149. RA Guillemot F., Billault A., Pourquie O., Behar G., Chausse A.M., Zoorob R., RA Kreibich G., Auffray C.; RT "A molecular map of the chicken major histocompatibility complex: the class RT II beta genes are closely linked to the class I genes and the nucleolar RT organizer"; RL EMBO J. 7(9):2775-2785(1988). XX RN [2] RP 1-2507 RX PUBMED; 11207288. RA Afanassieff M., Goto R.M., Ha J., Sherman M.A., Zhong L., Auffray C., RA Coudert F., Zoorob R., Miller M.M.; RT "At least one class I gene in restriction fragment pattern-Y (Rfp-Y), the RT second MHC gene cluster in the chicken, is transcribed, polymorphic, and RT shows divergent specialization in antigen binding region"; RL J. Immunol. 166(5):3324-3333(2001). XX RN [3] RP 1-2507 RA Afanassieff M., Zoorob R., Miller M.M.; RT ; RL Submitted (23-DEC-1999) to the INSDC. RL Department of Molecular Biology, Beckman Research Institute of the City of RL Hope National Medical Center, 1450 E. Duarte Road, Duarte, CA 91010-3011, RL USA XX DR MD5; eacad3caf313b8e0928b90e497e87f14. DR EuropePMC; PMC2998441; 21151886. DR EuropePMC; PMC3036124; 21637434. DR IMGT/LIGM; AF218783. XX FH Key Location/Qualifiers FH FT source 1..2507 FT /organism="Gallus gallus" FT /mol_type="genomic DNA" FT /note="MHC microchromosome #16; located 11.2 kb from YFVI FT locus" FT /db_xref="taxon:9031" FT mRNA join(<125..188,315..575,821..1096,1192..1464,1545..1646, FT 1761..1793,1951..1983,2169..>2188) FT /gene="YFV" FT /product="MHC Rfp-Y class I alpha chain" FT CDS join(125..188,315..575,821..1096,1192..1464,1545..1646, FT 1761..1793,1951..1983,2169..2188) FT /codon_start=1 FT /gene="YFV" FT /product="MHC Rfp-Y class I alpha chain" FT /note="cell surface glycoprotein" FT /db_xref="GOA:Q9BCW3" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003006" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR036179" FT /db_xref="InterPro:IPR037055" FT /db_xref="PDB:3P73" FT /db_xref="PDB:3P77" FT /db_xref="UniProtKB/TrEMBL:Q9BCW3" FT /protein_id="AAK15583.1" FT /translation="MGPSEVVVLGLLLGALGAAECGSHSLRYFLTGMTDPGPGMPRFVI FT VGYVDDKIFGTYNSKSRTAQPIVEMLPQEDQEHWDTQTQKAQGGERDFDWNLNRLPERY FT NKSKGSHTMQMMFGCDILEDGSIRGYDQYAFDGRDFLAFDMDTMTFTAADPVAEITKRR FT WETEGTYAERWKHELGTVCVQNLRRYLEHGKAALKRRVQPEVRVWGKEADGILTLSCHA FT HGFYPRPITISWMKDGMVRDQETRWGGIVPNSDGTYHASAAIDVLPEDGDKYWCRVEHA FT SLPQPGLFSWEPQPNLIPIVAGAVVAIVAVIAAVVGLVVWKSKSGKEKKGYEAAAGHDG FT ESSGSATGSEPSI" XX SQ Sequence 2507 BP; 431 A; 723 C; 874 G; 479 T; 0 other; gatctgcctg gcgcccggtg acgtcacccg cggtcacgga ctccattggc ggggagaggc 60 ggaggcacca atgggggcgc ggggcggtgc ctgggtagtc cacggagcgg cgccgagcgg 120 cgccatgggt ccgagcgagg tggtggtgct ggggctgctg ctgggcgccc tgggcgcggc 180 ggagtgcggt gagtgctgcg ggatcgggct gcccccggca ccgggacccg cggctcctcg 240 ctccccgacg ccggggctgc gtccgcggga cccccacccg cggctcacgg ctccgacgcc 300 gtctgtcccc gcagggtcgc actccctgcg ctacttcctg accgggatga cggatcccgg 360 ccccgggatg ccgcggttcg tgatcgtcgg gtacgtggac gacaaaatct tcggtaccta 420 caacagtaag agcaggactg cacagcctat cgtggagatg ctgccgcagg aggaccagga 480 gcactgggac acgcagaccc agaaggcgca gggcggtgag cgggattttg actggaacct 540 gaacaggctg ccggaacgct acaacaaaag taaaggtgag cgtgggggaa gctgcagcgc 600 gatgcgtctg ggacaggagc tctgtgtgcc gagggtgtcc gccagcccca ctgaggtgtg 660 gccgtgcccc acgcccagct gtgctgggcc gtccatgtgt ggtggcactg tccctgggcc 720 gccctgctcc tgcgcccacc caccccaccc cagcctcatg gcactcgcgg tgccccacag 780 ccctagaagc ctctcaccta ttactctggc tgtgcctcag ggtctcacac gatgcagatg 840 atgtttggct gtgacatcct ggaggacggc agcatccgag ggtacgatca gtatgcattt 900 gatgggaggg acttccttgc ctttgatatg gacacgatga cgttcaccgc ggcggatcca 960 gtggctgaaa tcaccaagag gagatgggag acagaaggga cgtatgctga gagatggaag 1020 catgagctgg ggactgtctg tgttcagaac ttgaggagat acctggagca tgggaaggca 1080 gcgctgaaaa ggagaggtga ggatgggagg gggacgtggg gctgggctgg gtgtggggca 1140 gaggctcagt gtggggtgct cagcccggcc caccacgtca cccacctgca gtgcagcccg 1200 aggtgcgagt gtgggggaag gaggccgatg ggatcctgac cttgtcctgc cacgctcacg 1260 gtttctaccc gcggcccatc accatcagct ggatgaagga cggcatggtc cgggaccagg 1320 agacccgctg ggggggcatc gtgcccaaca gcgatggcac ctaccacgcc tcggctgcca 1380 ttgatgtgct gccggaggat ggggacaagt attggtgccg cgtggagcac gccagcctgc 1440 cccagcctgg tctcttctca tggggtgagc tggcagcgtg gggcacgtgg ggttgggatt 1500 cgcaggctgc cccttccttt actgacaacg gcgctctcct ccagagccgc agcccaacct 1560 gattcccatt gtggcagggg cggtcgttgc catcgtggct gtcatcgctg cggtcgttgg 1620 attggtggtg tggaagagca agtcaggtaa aggtagtgag ctggggggag aaagcgggag 1680 ctgcaggtgg ggcctggacc cccttgggaa tgcccatgtt ctgacatgag cttaatgttc 1740 acacttcttt ctatctgtag ggaaggagaa gaagggttac gaagcagcag caggtgagtg 1800 ccaagggcag cgctgtcccc tgccagtgct tggggtcagg gcactctggg gcccctcgtt 1860 gctttggggt aatagtgcta gtggtggcat gatgctccat gccccatagc gagcacagag 1920 ccagggctca tggctctccc tcccttgcag gccacgacgg agaatccagt ggctcggcca 1980 caggtacagt gtggaacggg ggctcaggag gggtccctgt ggttggagcg gtcccagttc 2040 cctgcactcc cccgttgggc ccacggccgg ggcaatactg ggcccagccc tccctgctga 2100 acccccaggg tggtgagtca ggatgtggat gtggccccac gtgacaccat ctcttctcac 2160 ccgcacagga agtgaacctt ccatctgagt gctgtgctgc agtagccagc cttgcatgca 2220 cgtgtttgga gtttgagggt gtgtgcatct ctgtttgctc aactcctgca tctcctcggg 2280 ctgacacagt gtgtgtcttc aagtcaaata aaccccagca ctgtggattg ctggtttgca 2340 gctcagcctg cgtggtgtct gatttggggt ggggggaatc gcgtcccgtt cagcagctca 2400 gggcctggat ggggccccgt ggtgggtatc cactgctctg ctctcaccca tcaggctgcc 2460 gcgtgcattg tcagaggggt tccccaagtc agacatcgcc tgtcctc 2507 //