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EBI Dbfetch

ID   AB598348; SV 1; linear; genomic DNA; STD; HUM; 1021 BP.
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AC   AB598348;
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DT   10-NOV-2010 (Rel. 106, Created)
DT   10-NOV-2010 (Rel. 106, Last updated, Version 1)
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DE   Homo sapiens HLA-A gene, exon 2-4.
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KW   .
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OS   Homo sapiens (human)
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
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RN   [1]
RP   1-1021
RA   Nakajima F., Shimizu M.;
RT   ;
RL   Submitted (02-NOV-2010) to the INSDC.
RL   Contact:Fumiaki Nakajima Japanese Red Cross Society, Central Blood
RL   Institute; Tatsumi 2-1-67, Koto-ku, Tokyo 135-8521, Japan E-mail
RL   :h-nakajima@bs.jrc.or.jp
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RN   [2]
RA   Nakajima F., Tadokoro K.;
RT   "HLA-A*JMDP-A-015";
RL   Unpublished.
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DR   MD5; 98371a5f305cd3d697d8ce2b84d56188.
DR   IMGT/HLA; A*02:301N; HLA06109.
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FH   Key             Location/Qualifiers
FH
FT   source          1..1021
FT                   /organism="Homo sapiens"
FT                   /mol_type="genomic DNA"
FT                   /note="HLA-A*JMDP-A-015/31:01,B*40:02/51:01,C*03:04/14:02,
FT                   DRB1*04:03/09:01,JMDP01K095"
FT                   /db_xref="taxon:9606"
FT   exon            <1..270
FT                   /gene="HLA-A"
FT                   /number=2
FT                   /note="HLA-A*JMDP-A-015 (null allele)"
FT   gap             271..370
FT                   /estimated_length=unknown
FT   exon            371..645
FT                   /gene="HLA-A"
FT                   /number=3
FT                   /note="HLA-A*JMDP-A-015 (null allele)"
FT   misc_difference 426
FT                   /note="In the sequence of HLA-A*JMDP-A-015 (null allele), a
FT                   nucleotide (C) deletion sequences at position nt 426 was
FT                   compared with A*02:01:01:01,resulting a coding change at
FT                   codon 118 stop TAG"
FT   gap             646..745
FT                   /estimated_length=unknown
FT   exon            746..>1021
FT                   /gene="HLA-A"
FT                   /number=4
FT                   /note="HLA-A*JMDP-A-015 (null allele)"
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SQ   Sequence 1021 BP; 171 A; 243 C; 282 G; 125 T; 200 other;
     gctctcactc catgaggtat ttcttcacat ccgtgtcccg gcccggccgc ggggagcccc        60
     gcttcatcgc agtgggctac gtggacgaca cgcagttcgt gcggttcgac agcgacgccg       120
     cgagccagag gatggagccg cgggcgccgt ggatagagca ggagggtccg gagtattggg       180
     acggggagac acggaaagtg aaggcccact cacagactca ccgagtggac ctggggaccc       240
     tgcgcggcta ctacaaccag agcgaggccg nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       360
     nnnnnnnnnn gttctcacac cgtccagagg atgtatggct gcgacgtggg gtcggactgg       420
     cgcttcctcc gcgggtacca ccagtacgcc tagacggcaa ggattacatc gccctgaaag       480
     aggacctgcg ctcttggacc gcggcggaca tggcagctca gaccaccaag cacaagtggg       540
     aggcggccca tgtggcggag cagttgagag cctacctgga gggcacgtgc gtggagtggc       600
     tccgcagata cctggagaac gggaaggaga cgctgcagcg cacggnnnnn nnnnnnnnnn       660
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       720
     nnnnnnnnnn nnnnnnnnnn nnnnnacgcc cccaaaacgc atatgactca ccacgctgtc       780
     tctgaccatg aagccaccct gaggtgctgg gccctgagct tctaccctgc ggagatcaca       840
     ctgacctggc agcgggatgg ggaggaccag acccaggaca cggagctcgt ggagaccagg       900
     cctgcagggg atggaacctt ccagaagtgg gcggctgtgg tggtgccttc tggacaggag       960
     cagagataca cctgccatgt gcagcatgag ggtttgccca agcccctcac cctgagatgg      1020
     g                                                                      1021
//


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