Dbfetch
ID AB209136; SV 1; linear; mRNA; STD; HUM; 6694 BP. XX AC AB209136; XX DT 31-MAR-2005 (Rel. 83, Created) DT 07-OCT-2008 (Rel. 97, Last updated, Version 5) XX DE Homo sapiens mRNA for Down syndrome cell adhesion molecule isoform CHD2-42 DE precursor variant protein. XX KW FLI_CDNA. XX OS Homo sapiens (human) OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. XX RN [1] RP 1-6694 RA Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., RA Ohara O., Nagase T., Kikuno R.F.; RT ; RL Submitted (22-MAR-2005) to the INSDC. RL Osamu Ohara, Kazusa DNA Research Institute, Department of Human Gene RL Research; 2-6-7 Kazusa-kamatari, Kisarazu, Chiba 292-0818, Japan RL (E-mail:cdnainfo@kazusa.or.jp, URL:http://protein.gsc.riken.go.jp/, RL Tel:81-438-52-3930, Fax:81-438-52-3931) XX RN [2] RA Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S., RA Ohara O., Nagase T., Kikuno R.F.; RT "Homo sapiens protein coding cDNA"; RL Unpublished. XX DR MD5; f10b756000b7f30ef5caa499bca3263b. XX CC This work was supported in part by the National Project on Protein CC Structural and Functional Analysis , Ministry of Education, CC Culture , Sports, Science and Technology of Japan. CC Totoki Y, Toyoda A, Takeda T, Sakaki Y, Tanaka A, Yokoyama S. CC RIKEN Genomic Sciences Center, 1-7-22 Suehiro-cho, Tsurumi, CC Yokohama 230-0045, Japan. CC URL: http://protein.gsc.riken.go.jp/ XX FH Key Location/Qualifiers FH FT source 1..6694 FT /organism="Homo sapiens" FT /mol_type="mRNA" FT /clone="fg03766" FT /tissue_type="brain" FT /note="this clone is also named as hsk003000816" FT /note="vector:pBluescriptII SK plus" FT /db_xref="taxon:9606" FT CDS <1..6074 FT /codon_start=3 FT /product="Down syndrome cell adhesion molecule isoform FT CHD2-42 precursor variant" FT /note="Start codon is not identified." FT /db_xref="GOA:Q59GH3" FT /db_xref="H-InvDB:HIT000329071.10" FT /db_xref="InterPro:IPR003598" FT /db_xref="InterPro:IPR003599" FT /db_xref="InterPro:IPR003961" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR013098" FT /db_xref="InterPro:IPR013106" FT /db_xref="InterPro:IPR013783" FT /db_xref="InterPro:IPR033027" FT /db_xref="InterPro:IPR036116" FT /db_xref="InterPro:IPR036179" FT /db_xref="UniProtKB/TrEMBL:Q59GH3" FT /inference="non-experimental evidence, no additional FT details recorded" FT /protein_id="BAD92373.1" FT /translation="VARGRPGSGRGMWILALSLFQSFANVFSEDLHSSLYFVNASLQEV FT VFASTTGTLVPCPAAGIPPVTLRWYLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFST FT LIHDNTYYCTAENPSGKIRSQDVHIKAVLREPYTVRVEDQKTMRGNVAVFKCIIPSSVE FT AYITVVSWEKDTVSLVSGSRFLITSTGALYIKDVQNEDGLYNYRCITRHRYTGETRQSN FT SARLFVSDPANSAPSILDGFEHRKAMAGQRVELPCKALGHPEPDYRWLKDNMPLELSGR FT FQKTVTGLLIENIRPSDSGSYVCEVSNRYGTAKVIGRLYVKQPLKATISPRKVKSSVGS FT QVSLSCSVTGTEDQELSWYRNGEILNPGKNVRITGINHENLIMDHMVKSDGGAYQCFVR FT KDKLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPI FT LKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPAS FT IRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQ FT KEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDL FT PITITWQKDGRPIPGSLGVTIDNIDFTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQ FT LIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGR FT IQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKIPAMITSYPNTTLATQ FT GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKEVGEEVISTLQILPTVREDS FT GFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIKDVKARTITLRWTMGFDGNSPITGYD FT IECKNKSDSWDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELTIT FT ADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNI FT ISVDTSGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQ FT AIATSPESISISWSTLSKEALNGILQGFRVIYWANLMDGELGEIKNITTTQPSLELDGL FT EKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLK FT LNGIIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSS FT EIITVEPLAKAPARILTFSGTVTTPWMKDIVLPCKAVGDPSPAVKWMKDSNGTPSLVTI FT DGRRSIFSNGSFIIRTVKAEDSGYYSCIANNNWGSDEIILNLQVQVPPDQPRLTVSKTT FT SSSITLSWLPGDNGGSSIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFT FT LTAQNGVGPGRISEIIEAKTLGKEPQFSKEQELFASINTTRVRLNLIGWNDGGCPITSF FT TLEYRPFGTTVWTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQANFATLNY FT DGSTIPPLIKSVVQNEEGLTTNEGLKMLVTISCILVGVLLLFVLLLVVRRRRREQRLKR FT LRDAKSLAEMLMSKNTRTSDTLSKQQQTLRMHIDIPRAQLLIEERDTMETIDDRSTVLL FT TDADFGEAAKQKSLTVTHTVHYQSVSQATGPLVDVSDARPGTNPTTRRNAKAGPTARNR FT YASQWTLNRPHPTISAHTLTTDWRLPTPRAAGSVDKESDSYSVSPSQDTDRARSSMVST FT ESASSTYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQLTAGTNEYTDSLTSSTP FT SESGICRFTASPPKPQDGGRVMNMAVPKAHRPGDLIHLPPYLRMDFLLNRGGPGTSRDL FT SLGQACLEPQKSRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQREGAELGQ FT AAKMSSSQESLLDSRGHLKGNNPYAKSYTLV" XX SQ Sequence 6694 BP; 1776 A; 1764 C; 1693 G; 1461 T; 0 other; gcgtcgctcg cgggaggccg gggagcggca ggggcatgtg gatactggct ctctccttgt 60 tccagagctt cgcgaatgtt ttcagtgaag acctacactc cagcctctac tttgtcaatg 120 catctctgca agaggtagtg tttgccagca ccacggggac tctggtgccc tgccccgcag 180 caggcatccc tcctgtgact ctcagatggt acctagccac gggcgaggag atctacgatg 240 tccccgggat ccgccacgtc caccccaacg gcactctcca aattttcccc ttccctcctt 300 caagcttcag taccttaatc catgataata cttattattg cacagctgaa aatccttcag 360 ggaaaattag aagtcaggat gtccacatca aggctgtttt acgggagccc tatacagtcc 420 gtgtggagga ccagaaaacc atgagaggca atgttgcggt cttcaagtgc attatcccct 480 cctcggtgga ggcgtacatc actgtcgtct catgggagaa agacactgtt tcacttgtct 540 caggatctag atttctcatc acatccacgg gagccttgta tattaaagat gtacagaatg 600 aagatggatt gtataactac cgctgcatca cgcggcatcg atacaccgga gagacgaggc 660 agagcaacag cgccagactt tttgtatcag acccagcgaa ctcagcccca tccatactgg 720 atgggtttga gcatcgcaaa gccatggctg ggcagcgtgt ggagctgcct tgcaaagcgc 780 tcgggcaccc tgagccagat taccgctggc tgaaggacaa catgcccctg gaactttcag 840 ggaggttcca gaagaccgtg acggggctgc tcattgagaa cattcgcccc tcggactcag 900 gcagctatgt ttgtgaagtg tccaacagat acggaactgc taaggtgata ggccgcctgt 960 acgtgaaaca gccactgaaa gccaccatca gtcccaggaa ggttaaaagc agcgtgggta 1020 gccaagtttc cttgtcctgc agcgtgacag gaactgagga ccaggaactc tcctggtacc 1080 gcaatggtga aatcctcaac cctggaaaaa atgtgaggat cacagggatc aaccacgaaa 1140 accttataat ggatcacatg gtcaaaagtg acgggggcgc ataccagtgc tttgtgcgca 1200 aggacaagct gtccgctcaa gactatgtgc aggtggtcct tgaagatgga actcccaaaa 1260 ttatttctgc ctttagtgaa aaggtggtga gtccagcaga gccggtttcc cttatgtgca 1320 acgtgaaggg aacacctttg cccacgatca cgtggaccct ggacgatgac ccgattctca 1380 agggtggcag tcaccgcatc agccagatga tcacgtcgga ggggaacgtg gtcagctacc 1440 tgaacatctc cagctcccag gtccgggacg ggggagtcta ccgctgcact gccaacaact 1500 cggcgggagt cgtcctgtac caggctcgaa taaacgtaag agggcctgca agcattcgac 1560 caatgaaaaa catcacagca atagcaggac gggacacata cattcactgt cgtgtgattg 1620 gctatccgta ttactccatt aaatggtaca agaactctaa cctgcttcct ttcaaccacc 1680 gccaagtggc atttgagaac aatggaactc ttaaactttc agatgtgcaa aaggaagtgg 1740 acgaggggga gtacacgtgc aacgtgttgg ttcaaccaca actctccacc agccagagcg 1800 tccacgtgac cgtgaaagtt ccgcctttca tacaaccctt tgagtttcca agattctcca 1860 ttgggcagcg ggtcttcatc ccctgtgttg tggtctcagg ggacttaccc atcacgatca 1920 cctggcagaa ggatggccgg ccaatccctg ggagccttgg ggtgaccatt gacaatattg 1980 acttcacgag ctccttgagg atttccaatc tctcgctcat gcacaatggg aattacacct 2040 gcatagcccg gaatgaggcc gccgctgtgg agcaccaaag ccagttgatt gtcagagttc 2100 ctcccaagtt tgtggttcag ccacgggacc aggacgggat ttatggcaaa gcagtcatcc 2160 tcaattgttc tgctgagggt taccctgtac ctaccatcgt gtggaaattc tctaaaggtg 2220 ctggggttcc ccagttccag ccaattgccc taaatggccg aatccaagtt ctcagcaatg 2280 ggtcgttgct gatcaagcat gtcgtggagg aagacagtgg ctactacctc tgcaaggtca 2340 gcaacgatgt gggcgcagac gtcagcaagt ccatgtacct cacggttaaa attcctgcga 2400 tgataacatc ctatccaaat actaccctgg ccacgcaggg gcagaaaaag gagatgagct 2460 gcacggcgca tggtgagaag cccattatag tccgctggga gaaggaggac cgaatcatta 2520 accctgagat ggcccgttat cttgtgtcca ccaaggaggt gggagaagag gtgatttcta 2580 ctctgcagat tttgccaact gtgagagaag attctggttt cttttcctgc catgctatta 2640 attcttatgg ggaggaccgt ggaataattc agctcacagt gcaagagccc ccagaccctc 2700 ccgaaattga gatcaaagat gtcaaagcac gcacaattac gctcaggtgg accatggggt 2760 ttgatggaaa cagtcccatc acaggctacg atattgaatg caaaaataaa tcagactcct 2820 gggattctgc tcagagaacc aaagatgttt cccctcagct gaactcggcc accatcattg 2880 atatccaccc ttcctccacc tacagcatcc gcatgtacgc caagaaccgg attggcaaga 2940 gcgagcccag caacgagctc accatcacgg cggacgaggc agctcctgat ggtccacctc 3000 aggaagttca cctggagcct atatcatctc agagcatcag ggtcacatgg aaggctccca 3060 agaaacattt gcaaaatggg attatccgtg gctaccaaat aggttaccga gagtacagca 3120 ctgggggtaa cttccaattc aacattatca gtgtcgacac cagcggggac agtgaggttt 3180 acaccctgga caacctgaat aagttcactc agtacggcct ggtggtgcag gcctgtaacc 3240 gggccggcac ggggccttct tctcaggaaa tcatcaccac cactctcgag gatgtgccca 3300 gttacccccc cgaaaatgtc caagccatag caacatcacc agaaagcata tcaatatcct 3360 ggtccacact ttccaaggaa gccttgaatg gaattctcca ggggttcaga gtcatttact 3420 gggccaacct catggacgga gagctgggtg agattaaaaa catcaccacc acacagcctt 3480 cactggagct ggacgggctg gaaaagtaca ccaactacag catccaggtg ctggccttca 3540 cccgcgcagg agacggggtc aggagtgagc agatcttcac ccggaccaaa gaggatgttc 3600 caggtcctcc cgcgggtgtg aaggcagcgg cggcctcagc ctccatggtc tttgtgtcct 3660 ggcttccccc tctcaagctg aacggcatca tccgaaagta cactgtattc tgctcccacc 3720 cctatcccac agtgatcagc gagtttgagg cctctcccga ctcgttttcc tacagaattc 3780 ccaacctgag taggaatcgt cagtacagcg tctgggtggt ggctgttact tcagccggaa 3840 gaggcaacag cagtgaaatc atcacagttg agccactagc aaaagctcct gcacgaatcc 3900 tgaccttcag tgggacagtg actactccat ggatgaaaga cattgtcttg ccttgtaagg 3960 ctgttgggga cccttctcct gcagtcaaat ggatgaaaga cagtaacggg acacccagtc 4020 tagtaacgat tgatgggcgg aggagcatct ttagcaacgg aagcttcatt attcgcacgg 4080 tgaaagcaga agactccggc tattacagct gcattgccaa taacaactgg ggatctgatg 4140 aaattatttt aaacttacaa gtacaagttc caccagatca gcctcggctt acagtctcca 4200 agaccacgtc ttcctccatc accctttctt ggctccctgg agacaacggg ggcagctcta 4260 tcagaggata catactgcag tactccgagg acaatagtga gcagtggggg agttttccaa 4320 tcagccccag cgaacgttcc tatcgcttgg aaaatctcaa atgtgggact tggtataagt 4380 tcacactgac agcccaaaat ggagtgggcc cagggcgcat aagtgaaatc atagaagcaa 4440 agaccttagg aaaagagccc cagttctcaa aggagcagga gctgtttgcc agcatcaaca 4500 ccacacgcgt gaggctgaac ctcattggct ggaatgatgg cggctgcccc atcacctcct 4560 tcacactaga gtacaggccc tttgggacca cagtttggac cacagctcag aggacctctc 4620 tctccaagtc ctacatcctg tatgacctgc aggaagccac ctggtatgag ctgcagatgc 4680 gggtgtgcaa cagtgcgggc tgcgcggaga agcaggccaa cttcgctacg ctgaactacg 4740 atggcagtac aattcctcca ctcattaagt cagttgtcca aaacgaagaa gggctgacga 4800 ccaacgaggg gctcaagatg ctggtgacca tctcctgtat cctggtgggg gtcttgctgc 4860 tgtttgtgct cctgctggtt gtgcggagga ggcggcggga gcagaggcta aagaggctgc 4920 gagatgcaaa gagtttagct gaaatgctca tgagtaagaa tacccggact tcagatacgt 4980 taagcaagca acagcagacc ctgcgaatgc acatcgacat acccagggct cagcttttga 5040 ttgaagagag agacacgatg gagaccattg atgatcgctc cacggttctg ttgacggatg 5100 ctgactttgg agaggcagct aagcagaagt ccctgacggt cactcacacg gtccattacc 5160 aatcggtgtc tcaggccact gggcccttag tggatgtttc agacgctcgg ccgggaacga 5220 atcccaccac caggaggaat gccaaggctg ggcccacagc gagaaaccgc tatgccagcc 5280 agtggaccct caaccgaccc caccccacca tctcagcaca caccctcacc acagactgga 5340 ggctgccaac acccagggct gcaggatcag tagacaaaga gagcgacagt tacagcgtca 5400 gcccctcgca agacacagat cgagcaagaa gcagcatggt ctccacagaa agtgcctcct 5460 ccacttacga agaactggcc agggcctacg aacacgccaa gatggaagag caactgaggc 5520 acgccaagtt caccatcacg gagtgcttca tatcagacac gtcatcggag cagttgacgg 5580 cagggacaaa tgagtacacg gacagtctga cctccagcac cccttccgaa tcgggaatct 5640 gcaggttcac tgcatctccc cccaaacctc aggatggagg aagagtaatg aatatggcag 5700 ttccaaaggc acatcggcca ggtgacctca tacatttgcc tccatacctt agaatggact 5760 ttttgttaaa ccgaggtggt ccaggcacca gcagggacct gagcttagga caagcatgct 5820 tggaacctca gaaaagccgg accctgaagc gccccacggt cctggagccc atcccgatgg 5880 aagccgcctc ctccgcctcc tccacgagag aaggacagtc gtggcagccg ggggccgtgg 5940 ccacattacc tcagcgggag ggagcagagc tgggacaggc agctaaaatg agcagctccc 6000 aagaatcact gctcgactcc cggggccatt tgaaaggaaa caatccttac gcaaaatctt 6060 acaccctggt ataacagaca gcatgactgg acagcggttg taaatacaat tcaaacaatt 6120 caatcaaagc tacctttttt ttacggaatt ccaatattta taattaaaga aaattgccaa 6180 aatatattaa aaaaaaaaaa gagaaaatac tgaaaccaca gacagtgcaa agactctcct 6240 gctttttttc tgtctgagtg tgagctccat ccgcctgggc atctgatttt ttgggaaaga 6300 agtccagttt tatgatcttc acaggctatt gcatttttac tgattttcta caaaagtgca 6360 tgggggggat taattaaacc ttctgactgg aagttctatc acacaagagg caagaaagaa 6420 aacagggtgg gtgggaaatc agcctatttg tgaatttaaa aggaacaccg atttgcgggc 6480 aggggaaaac ttcagtcacg tttgcacacc tttctttccc attagaaacc gggttctcaa 6540 tttggtcttc ttttgttgtt aattaggatg agtgccgtca gtgaaggggt ggggggaatc 6600 aatttggttt tctctcttgt ttctttttta atttaatgag acactctttg cattttgtct 6660 aagcgaaata aaaaagaaaa ggttgtctgc cttt 6694 //