ID U69972; SV 1; linear; gDNA; STD; HUM; 293 BP.
XX
AC U69972;
XX
DT 13-SEP-2012 (Rel. 201237-4, arrived in LIGM-DB)
DT 18-DEC-2012 (Rel. 201251-2, Last updated, Version 5)
XX
DE Human MHC class I-like molecule PERB11.1-54.1 (PERB11.1) gene, partial cds.
XX
KW Immunoglobulin superfamily (IgSF); RPI-MH1Like; RPI-MH1Like-Alpha;
KW Major histocompatibility superfamily (MhSF);
KW related protein of the immune system (RPI); conventional-with-leader;
KW regular; gDNA; undefined; functional; L-conventional-gene.
XX
OS Homo sapiens (human)
OC cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria;
OC Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi;
OC Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota;
OC Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates;
OC Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae;
OC Homo; Homo sapiens.
XX
RN [1]
RP 1-293
RA Koganei S., Matsumoto N., Yamamoto K.;
RT ;
RL Submitted (06-OCT-2003) to the INSDC.
RL Satoru Koganei, The University of Tokyo, Department of Integrated
RL Biosciences, Graduate School of Frontier Scieces; 5-1-5 Kashiwanoha, The
RL University of Tokyo, Bioscience BLD. Room 602, Kashiwa, Chiba, 277-8562,
RL Japan (E-mail:kk27512@mail.ecc.u-tokyo.ac.jp, Tel:81-4-7136-3617,
RL Fax:81-4-7136-3619)
XX
RN [2]
RP 1-293
RA Favre N., Daubenberger C., Pluschke G.;
RT ;
RL Submitted (01-OCT-1997) to the INSDC.
RL MPI, Swiss Tropical Inst., Socinstrasse 57, Basel, CH 4002, Switzerland
XX
RN [3]
RP 1-293
RA Girschick H.J.;
RT ;
RL Submitted (09-OCT-2003) to the INSDC.
RL Department of Internal Medicine, Harold C. Simmons Arthritis Research
RL Center, University of Texas Southwestern Medical Center, 5323 Harry Hines
RL Blvd., Dallas, TX 75235-8884, USA
XX
DR ENA; U69972.
DR IMGT/HLA; HLA01023; MICA*01201.
XX
CC IMGT/LIGM-DB annotation level: by annotators
XX
FH Key Location/Qualifiers
FH
FT L-GENE <1..>293
FT /partial
FT /allele_alias="HLA-DB allele name: MICA*01201"
FT /chromosome="6"
FT /db_xref="taxon:9606"
FT /functional
FT /haplotype="54.1 MHC ancestral haplotype
FT (R88-15373:HLA-A24; Cw1; -B54; DRB1*0405; DRB4*0101;
FT DQA1*0300; DQB1*0401)"
FT /IMGT_allele="MICA*12"
FT /IMGT_gene="MICA"
FT /IMGT_map="6p21.33"
FT /isolate="R88-15375 (AOH-100062T)"
FT /mol_type="genomic DNA"
FT /organism="Homo sapiens"
FT L-GENE-UNIT <1..>293
FT /partial
FT /db_xref="HGNC:7090"
FT /db_xref="UniProtKB/TrEMBL:P79535"
FT /protein_id="AAB51796.1"
FT EX4 <1..49
FT /partial
FT /translation="CYMEHSGNHSTHPVPS"
FT C-LIKE <1..48
FT /partial
FT /translation="CYMEHSGNHSTHPVPS"
FT /AA_IMGT="AA 104 to 123, AA 110 to 113 are missing"
FT DONOR-SPLICE 49..51
FT INTRON 50..149
FT ACCEPTOR-SPLICE 147..151
FT EX5 150..281
FT /codon_start=3
FT /translation="KVLVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAE
FT GP"
FT CONNECTING-REGION 150..184
FT /codon_start=3
FT /translation="KVLVLQSHWQT"
FT /AA_IMGT="AA 1 to 12"
FT /IMGT_note="encoded by 5' part of EX5"
FT /splice-expected-nt="g"
FT /splice-expectedcodon="ggg [G]"
FT /splicing-frame="sf1"
FT TRANSMEMBRANE-REGION185..241
FT /translation="FHVSAVAAAAIFVIIIFYV"
FT /AA_IMGT="AA 1 to 19"
FT /IMGT_note="encoded by middle part of EX5"
FT /STR-allele="A4"
FT CY-PART1 242..280
FT /translation="RCCKKKTSAAEGP"
FT /AA_IMGT="AA 1 to 13"
FT /IMGT_note="encoded by 3' part of EX5"
FT DONOR-SPLICE 281..283
FT INTRON 282..293
XX
SQ Sequence 293 BP; 64 A; 62 C; 85 G; 82 T; 0 other;
tgctacatgg aacacagcgg gaatcacagc actcaccctg tgccctctgg tgagcctagg 60
gtgaccctgg agagggtcag gccagggtag ggacagcagg gatggctgtg gctctctgcc 120
cagtgtataa caagtccctt ttttttcagg gaaagtgctg gtgcttcaga gtcattggca 180
gacattccat gtttctgctg ttgctgctgc tgctattttt gttattatta ttttctatgt 240
ccgttgttgt aagaagaaaa catcagctgc agagggtcca ggtgagaaaa ggg 293
//