Dbfetch

ID   U69972; SV 1; linear; gDNA; STD; HUM; 293 BP.
XX
AC   U69972;
XX
DT   13-SEP-2012 (Rel. 201237-4, arrived in LIGM-DB)
DT   18-DEC-2012 (Rel. 201251-2, Last updated, Version 5)
XX
DE   Human MHC class I-like molecule PERB11.1-54.1 (PERB11.1) gene, partial cds.
XX
KW   Immunoglobulin superfamily (IgSF); RPI-MH1Like; RPI-MH1Like-Alpha;
KW   Major histocompatibility superfamily (MhSF);
KW   related protein of the immune system (RPI); conventional-with-leader;
KW   regular; gDNA; undefined; functional; L-conventional-gene.
XX
OS   Homo sapiens (human)
OC   cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria;
OC   Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi;
OC   Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota;
OC   Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates;
OC   Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae;
OC   Homo; Homo sapiens.
XX
RN   [1]
RP   1-293
RA   Koganei S., Matsumoto N., Yamamoto K.;
RT   ;
RL   Submitted (06-OCT-2003) to the INSDC.
RL   Satoru Koganei, The University of Tokyo, Department of Integrated
RL   Biosciences, Graduate School of Frontier Scieces; 5-1-5 Kashiwanoha, The
RL   University of Tokyo, Bioscience BLD. Room 602, Kashiwa, Chiba, 277-8562,
RL   Japan (E-mail:kk27512@mail.ecc.u-tokyo.ac.jp, Tel:81-4-7136-3617,
RL   Fax:81-4-7136-3619)
XX
RN   [2]
RP   1-293
RA   Favre N., Daubenberger C., Pluschke G.;
RT   ;
RL   Submitted (01-OCT-1997) to the INSDC.
RL   MPI, Swiss Tropical Inst., Socinstrasse 57, Basel, CH 4002, Switzerland
XX
RN   [3]
RP   1-293
RA   Girschick H.J.;
RT   ;
RL   Submitted (09-OCT-2003) to the INSDC.
RL   Department of Internal Medicine, Harold C. Simmons Arthritis Research
RL   Center, University of Texas Southwestern Medical Center, 5323 Harry Hines
RL   Blvd., Dallas, TX 75235-8884, USA
XX
DR   ENA; U69972.
DR   IMGT/HLA; HLA01023; MICA*01201.
XX
CC   IMGT/LIGM-DB annotation level: by annotators
XX
FH   Key                 Location/Qualifiers
FH   
FT   L-GENE              <1..>293
FT                       /partial
FT                       /allele_alias="HLA-DB allele name: MICA*01201"
FT                       /chromosome="6"
FT                       /db_xref="taxon:9606"
FT                       /functional
FT                       /haplotype="54.1 MHC ancestral haplotype 
FT                       (R88-15373:HLA-A24; Cw1; -B54; DRB1*0405; DRB4*0101; 
FT                       DQA1*0300; DQB1*0401)"
FT                       /IMGT_allele="MICA*12"
FT                       /IMGT_gene="MICA"
FT                       /IMGT_map="6p21.33"
FT                       /isolate="R88-15375 (AOH-100062T)"
FT                       /mol_type="genomic DNA"
FT                       /organism="Homo sapiens"
FT   L-GENE-UNIT         <1..>293
FT                       /partial
FT                       /db_xref="HGNC:7090"
FT                       /db_xref="UniProtKB/TrEMBL:P79535"
FT                       /protein_id="AAB51796.1"
FT   EX4                 <1..49
FT                       /partial
FT                       /translation="CYMEHSGNHSTHPVPS"
FT   C-LIKE              <1..48
FT                       /partial
FT                       /translation="CYMEHSGNHSTHPVPS"
FT                       /AA_IMGT="AA 104 to 123, AA 110 to 113 are missing"
FT   DONOR-SPLICE        49..51
FT   INTRON              50..149
FT   ACCEPTOR-SPLICE     147..151
FT   EX5                 150..281
FT                       /codon_start=3
FT                       /translation="KVLVLQSHWQTFHVSAVAAAAIFVIIIFYVRCCKKKTSAAE
FT                       GP"
FT   CONNECTING-REGION   150..184
FT                       /codon_start=3
FT                       /translation="KVLVLQSHWQT"
FT                       /AA_IMGT="AA 1 to 12"
FT                       /IMGT_note="encoded by 5' part of EX5"
FT                       /splice-expected-nt="g"
FT                       /splice-expectedcodon="ggg [G]"
FT                       /splicing-frame="sf1"
FT   TRANSMEMBRANE-REGION185..241
FT                       /translation="FHVSAVAAAAIFVIIIFYV"
FT                       /AA_IMGT="AA 1 to 19"
FT                       /IMGT_note="encoded by middle part of EX5"
FT                       /STR-allele="A4"
FT   CY-PART1            242..280
FT                       /translation="RCCKKKTSAAEGP"
FT                       /AA_IMGT="AA 1 to 13"
FT                       /IMGT_note="encoded by 3' part of EX5"
FT   DONOR-SPLICE        281..283
FT   INTRON              282..293
XX
SQ   Sequence 293 BP; 64 A; 62 C; 85 G; 82 T; 0 other;
     tgctacatgg aacacagcgg gaatcacagc actcaccctg tgccctctgg tgagcctagg        60
     gtgaccctgg agagggtcag gccagggtag ggacagcagg gatggctgtg gctctctgcc       120
     cagtgtataa caagtccctt ttttttcagg gaaagtgctg gtgcttcaga gtcattggca       180
     gacattccat gtttctgctg ttgctgctgc tgctattttt gttattatta ttttctatgt       240
     ccgttgttgt aagaagaaaa catcagctgc agagggtcca ggtgagaaaa ggg              293
//