Dbfetch
ID U69630; SV 1; linear; gDNA; STD; HUM; 1203 BP. XX AC U69630; XX DT 13-SEP-2012 (Rel. 201237-4, arrived in LIGM-DB) DT 18-DEC-2012 (Rel. 201251-2, Last updated, Version 5) XX DE Human PERB11.1 gene, partial cds. XX KW Immunoglobulin superfamily (IgSF); RPI-MH1Like; RPI-MH1Like-Alpha; KW Major histocompatibility superfamily (MhSF); KW related protein of the immune system (RPI); conventional-with-leader; KW regular; gDNA; undefined; functional; L-conventional-gene. XX OS Homo sapiens (human) OC cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; OC Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; OC Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; OC Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; OC Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; OC Homo; Homo sapiens. XX RN [1] RP 1-1203 RX PUBMED; 15519543. RA Kiryu I., Dijkstra J.M., Sarder R.I., Fujiwara A., Yoshiura Y., Ototake M.; RT "New MHC class Ia domain lineages in rainbow trout (Oncorhynchus mykiss) RT which are shared with other fish species"; RL Fish Shellfish Immunol 18(3):243-254(2005). XX RN [2] RP 1-1203 RA Dijkstra J.M., Kiryu I., Sarder R.I., Ototake M.; RT ; RL Submitted (17-APR-2003) to the INSDC. RL Immunology Section, National Research Institute of Aquaculture, Hiruta RL 224-1, Tamaki, Mie-ken 519-0423, Japan XX RN [3] RP 1-1203 RG cGRASP (B.F. Koop & W.S. Davidson) RA ; RT ; RL Submitted (24-AUG-2010) to the INSDC. RL Biology - Centre for Biomedical Research, University of Victoria, Victoria, RL BC V8W 2Y2, Canada XX DR ENA; U69630. DR IMGT/HLA; HLA01022; MICA*011. XX CC IMGT/LIGM-DB annotation level: by annotators XX FH Key Location/Qualifiers FH FT L-GENE <1..>1203 FT /partial FT /allele_alias="HLA-DB allele name: MICA*011" FT /chromosome="6" FT /db_xref="taxon:9606" FT /functional FT /haplotype="65.1 MHC ancestral haplotype HLA-A33, FT Cw802, -B65, -DRB1*0102, -DQA1*0101, -DQB1*0501" FT /IMGT_allele="MICA*11" FT /IMGT_gene="MICA" FT /IMGT_map="6p21.33" FT /isolate="R86-12364 (4AOH-100002N)" FT /mol_type="genomic DNA" FT /organism="Homo sapiens" FT L-GENE-UNIT <1..>1203 FT /partial FT /db_xref="GOA:Q99696" FT /db_xref="HGNC:7090" FT /db_xref="HSSP:Q29983" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR011161" FT /db_xref="UniProtKB/TrEMBL:Q99696" FT /protein_id="AAB51786.1" FT INTRON 1..284 FT ACCEPTOR-SPLICE 282..286 FT EX2 285..539 FT /codon_start=3 FT /translation="PHSLRYNLTVLSGDGSVQSGFLAEVHLDGQPFLRCDRQKCR FT AKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKE" FT G-ALPHA1-LIKE <285..538 FT /partial FT /codon_start=3 FT /translation="PHSLRYNLTVLSGDGSVQSGFLAEVHLDGQPFLRCDRQKCR FT AKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKE" FT /AA_IMGT="AA 2 to 86, AA 40 and 41 are missing, AA 54A FT is present" FT DONOR-SPLICE 539..541 FT INTRON 540..813 FT ACCEPTOR-SPLICE 811..815 FT EX3 814..1101 FT /codon_start=3 FT /translation="LHSLQEIRVCEIHEDNSTRSSQHFYYDGELFLSQNLETEEW FT TMPQSSRAQTLAMNVRNFLKEDAVKTKTHYHAMHADCLQELRRYLKSGVVLRRT" FT G-ALPHA2-LIKE 814..1100 FT /codon_start=3 FT /translation="LHSLQEIRVCEIHEDNSTRSSQHFYYDGELFLSQNLETEEW FT TMPQSSRAQTLAMNVRNFLKEDAVKTKTHYHAMHADCLQELRRYLKSGVVLRRT" FT /AA_IMGT="AA 1 to 92, AA 17, 40, 41 and 87 are FT missing, AA 49.1 to 49.5, 61A, 61B and 72A are present" FT /splice-expected-nt="g" FT /splice-expectedcodon="ggc [G]" FT /splicing-frame="sf1" FT DONOR-SPLICE 1101..1103 FT INTRON 1102..1203 XX SQ Sequence 1203 BP; 275 A; 323 C; 342 G; 263 T; 0 other; ctctcccctt ggcccctatt cccttagggg gcttgtggcc acccagtcct tgcacctggc 60 ctacaagttt gccatcttca ttcccccttc ttctgttcat cagccccctc ctctatcctc 120 ccaccctcac agttttcttt gtatatgaaa tcctcgttct tgtccctttg cccgtgtgca 180 tttcctgcct cctcaggaag gttgggacag cagacctgtg tgttaaacat caatgtgaag 240 ttacttccag gaagaagttt cacctgtgat ttcctcttcc ccagagcccc acagtcttcg 300 ttataacctc acggtgctgt ccggggatgg atctgtgcag tcagggtttc tcgctgaggt 360 acatctggat ggtcagccct tcctgcgctg tgacaggcag aaatgcaggg caaagcccca 420 gggacagtgg gcagaagatg tcctgggaaa taagacatgg gacagagaga ccagggactt 480 gacagggaac ggaaaggacc tcaggatgac cctggctcat atcaaggacc agaaagaagg 540 tgagagtcgg caggggcaag agtgactgga gaggcctttt ccagaaaagt taggggcaga 600 gagcagggac ctgtatctac ccactggatc tggctcaggc tgggggtgag gaatgggggt 660 cagtggaact cagcagggag gtgagccggc actcagccca cacagggagg catggaggag 720 gaccagggag gcgtaccccc tgggctgagt tcctcacttg ggtggaaagg tgatgggttc 780 gggaatggag aagtcactgc tgggtggggg caggcttgca ttccctccag gagattaggg 840 tctgtgagat ccatgaagac aacagcacca ggagctccca gcatttctac tacgatgggg 900 agctcttcct ctcccaaaac ctggagactg aggaatggac aatgccccag tcctccagag 960 ctcagacctt ggccatgaac gtcaggaatt tcttgaagga agatgccgtg aagaccaaga 1020 cacactatca cgctatgcat gcagactgcc tgcaggaact acggcgatat ctaaaatccg 1080 gcgtagtcct gaggagaaca ggtaccgacg ctggccaggg gctctcctct ccctccaatt 1140 ctgctagagt tgcctcacct cccagatgtg tccagggaaa ccctccctgt gctatggatg 1200 aag 1203 //