Dbfetch
ID AH013029; SV 2; linear; gDNA; STD; HUM; 652 BP. XX AC AH013029; AY333121-AY333122; XX DT 16-DEC-2011 (Rel. 201150-5, arrived in LIGM-DB) DT 06-OCT-2012 (Rel. 201240-6, Last updated, Version 2) XX DE Homo sapiens MHC class II HLA-DQ-beta chain (HLA-DQB1) gene, HLA-DQB1*02 DE allele, partial cds. XX KW antigen receptor; MH2; MH2-Beta; KW Major histocompatibility superfamily (MhSF); regular; gDNA; undefined. XX OS Homo sapiens (human) OC cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; OC Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; OC Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; OC Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; OC Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; OC Homo; Homo sapiens. XX RN [1] RC Contact ncbi-contacts@bcm.tmc.edu for more information. RP 1-652 RA Rat Genome Sequencing Consortium; RT ; RL Submitted (11-JUL-2003) to the INSDC. RL Human Genome Sequencing Center, Department of Molecular and Human Genetics, RL Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA XX RN [2] RP 1-652 RA Gragg H., Cordovado S.K., Hendrix M.M., Mueller P.W.; RT ; RL Submitted (30-JUN-2003) to the INSDC. RL NCEH/DLS/MBB/DMRAS, Centers for Disease Control and Prevention, 4770 Buford RL Highway MS F-50, Atlanta, GA 30341, USA XX DR ENA; AH013029. XX CC IMGT/LIGM-DB annotation level: keyword level CC CC On or before Jul 29, 2011 this sequence version replaced CC gi:33088046, gi:33088047, gi:33088045. XX FH Key Location/Qualifiers (from EMBL) FH FT source 1..652 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT gene <1..>652 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02" FT mRNA join(<1..270,371..>652) FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02" FT CDS join(<1..270,371..>652) FT /codon_start=3 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02" FT /product="MHC class II HLA-DQ-beta chain" FT /note="binds to the T cell receptor" FT /protein_id="AAP93137.1" FT /translation="DFVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAV FT TLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEAL FT NHHNLLVCSVTDFYPAQIKVRWFRNDEEETAGVVSTPLIRNGDWTFQILVMLEMTPQRG FT DVYTCHVEHPSLQSPITVEW" FT exon 1..270 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02" FT /number=2 FT /note="similar to HLA-DBQ1*0201 allele" FT gap 271..370 FT /estimated_length=unknown FT exon 371..652 FT /gene="HLA-DQB1" FT /allele="HLA-DQB1*02" FT /number=3 FT variation 493 FT /gene="HLA-DQB1" FT /replace="c" FT /note="results in glu to gln change; differentiates it from FT HLA-DBQ1*0201" XX SQ Sequence 652 BP; 123 A; 158 C; 171 G; 100 T; 100 other; aggatttcgt gtaccagttt aagggcatgt gctacttcac caacgggaca gagcgcgtgc 60 gtcttgtgag cagaagcatc tataaccgag aagagatcgt gcgcttcgac agcgacgtgg 120 gggagttccg ggcggtgacg ctgctggggc tgcctgccgc cgagtactgg aacagccaga 180 aggacatcct ggagaggaaa cgggcggcgg tggacagggt gtgcagacac aactaccagt 240 tggagctccg cacgaccttg cagcggcgag nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 300 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 360 nnnnnnnnnn tggagcccac agtgaccatc tccccatcca ggacagaggc cctcaaccac 420 cacaacctgc tggtctgctc ggtgacagat ttctatccag cccagatcaa agtccggtgg 480 tttcggaatg acgaggagga gacagctggc gttgtgtcca ccccccttat taggaatggt 540 gactggacct tccagatcct ggtgatgctg gaaatgactc cccagcgtgg agacgtctac 600 acctgccacg tggagcaccc cagcctccag agccccatca ccgtggagtg gc 652 //