Dbfetch
ID AH010819; SV 2; linear; gDNA; STD; HUM; 2399 BP. XX AC AH010819; AF264735-AF264737; XX DT 13-SEP-2012 (Rel. 201237-4, arrived in LIGM-DB) DT 25-JUN-2015 (Rel. 201526-4, Last updated, Version 5) XX DE Homo sapiens MHC class I chain-related protein A (MICA) gene, MICA*017 DE allele, partial cds. XX KW Immunoglobulin superfamily (IgSF); RPI-MH1Like; RPI-MH1Like-Alpha; KW Major histocompatibility superfamily (MhSF); KW related protein of the immune system (RPI); regular; gDNA; undefined; KW functional. XX OS Homo sapiens (human) OC cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; OC Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; OC Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; OC Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates; OC Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; OC Homo; Homo sapiens. XX RN [1] RP 1-2399 RX DOI; 10.1034/j.1399-0039.2001.057006520.x. RX PUBMED; 11556982. RA Obuchi N., Takahashi M., Nouchi T., Satoh M., Arimura T., Ueda K., Akai J., RA Ota M., Naruse T., Inoko H., Numano F., Kimura A.; RT "Identification of MICA alleles with a long Leu-repeat in the transmembrane RT region and no cytoplasmic tail due to a frameshift-deletion in exon 4"; RL Tissue Antigens 57(6):520-535(2001). XX RN [2] RP 1-2399 RA Obuchi N., Kimura A.; RT ; RL Submitted (08-MAY-2000) to the INSDC. RL Molecular Pathology, Medical Research Institute, Tokyo Medical and Dental RL University, 2-3-10 Kanda-Surugadai, Chiyoda-Ku, Tokyo 101-0062, Japan XX DR ENA; AH010819. XX CC IMGT/LIGM-DB annotation level: keyword level CC CC On or before Jun 29, 2011 this sequence version replaced CC gi:14279216, gi:14279217, gi:14279218, gi:14279215. XX FH Key Location/Qualifiers (from EMBL) FH FT source 1..2399 FT /organism="Homo sapiens" FT /chromosome="6" FT /map="6p21.3" FT /mol_type="genomic DNA" FT /cell_line="DBB" FT /cell_type="B-lymphoblastoid" FT /db_xref="taxon:9606" FT gene <1..>2399 FT /gene="MICA" FT /allele="MICA*017" FT mRNA join(<25..279,554..841,1553..1830,1931..2077,2222..>2399) FT /gene="MICA" FT /allele="MICA*017" FT /product="MHC class I chain-related protein A" FT CDS join(<25..279,554..841,1553..1830,1931..2077,2222..2230) FT /codon_start=3 FT /gene="MICA" FT /allele="MICA*017" FT /product="MHC class I chain-related protein A" FT /db_xref="GOA:Q29983" FT /db_xref="HGNC:7090" FT /db_xref="InterPro:IPR001039" FT /db_xref="InterPro:IPR003597" FT /db_xref="InterPro:IPR007110" FT /db_xref="InterPro:IPR011161" FT /db_xref="InterPro:IPR011162" FT /db_xref="InterPro:IPR013783" FT /db_xref="PDB:1B3J" FT /db_xref="PDB:1HYR" FT /db_xref="UniProtKB/Swiss-Prot:Q29983" FT /protein_id="AAK58536.1" FT /translation="PHSLRYNLTVLSGDGSVQSGFLAEVHLDGQPFLRCDRQKCRAKPQ FT GQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLREIRVCEIHEDNSTR FT SSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC FT LQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSL FT SHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKCWCFRV FT IGRHSMFLLLLLLLLLLLLFLLLLFSTSVVVRRKHQLQRVQSS" FT exon 25..279 FT /gene="MICA" FT /allele="MICA*017" FT /number=2 FT exon 554..841 FT /gene="MICA" FT /allele="MICA*017" FT /number=3 FT gap 1429..1528 FT /estimated_length=unknown FT exon 1553..1830 FT /gene="MICA" FT /allele="MICA*017" FT /number=4 FT exon 1931..2077 FT /gene="MICA" FT /allele="MICA*017" FT /number=5 FT gap 2087..2186 FT /estimated_length=unknown FT exon 2222..>2399 FT /gene="MICA" FT /allele="MICA*017" FT /number=6 FT 3'UTR 2231..>2399 FT /gene="MICA" FT /allele="MICA*017" XX SQ Sequence 2399 BP; 489 A; 594 C; 648 G; 466 T; 202 other; cacctgtgat ttcctcttcc ccagagcccc acagtcttcg ttataacctc acggtgctgt 60 ccggggatgg atctgtgcag tcagggtttc tcgctgaggt acatctggat ggtcagccct 120 tcctgcgctg tgacaggcag aaatgcaggg caaagcccca gggacagtgg gcagaagatg 180 tcctgggaaa taagacatgg gacagagaga ccagggactt gacagggaac ggaaaggacc 240 tcaggatgac cctggctcat atcaaggacc agaaagaagg tgagagtcgg caggggcaag 300 agtgactgga gaggcctttt ccagaaaagt taggggcaga gagcagggac ctgtatctac 360 ccactggatc tggctcaggc tgggggtgag gaatgggggt cagtggaact cagcagggag 420 ntgagccggc actcagccca cacagggagg catggaggag ggccagggag gcgtaccccc 480 tgggctgagt tcctcanttg ggtggaaagg tgatgggttc gggaatggag aagtcactgc 540 tgggtggggg caggcttgca ttccctccgg gagattaggg tctgtgagat ccatgaagac 600 aacagcacca ggagctccca gcatttctac tacgatgggg agctcttcct ctcccaaaac 660 ctggagactg aggaatggac aatgccccag tcctccagag ctcagacctt ggccatgaac 720 gtcaggaatt tcttgaagga agatgccatg aagaccaaga cacactatca cgctatgcat 780 gcagactgcc tgcaggaact acggcgatat ctaaaatccg gcgtagtcct gaggagaaca 840 ggtaccgacg ctggccaggg gctctcctct ccctccaatt ctgctagagt tgcctcacct 900 cccagatgtg tccagggaaa ccctccctgt gctatggatg aaggcatttc ctgttggcac 960 atcgtgtcct gattttcctc tattgttaga gccactggat aaagacagtg ggtcagggac 1020 tggaccatcc agtgttgtaa tcagggcaag tagaggaccc tccgacagaa tcctgagcct 1080 ggggtgggtg tcaggcagga gaggaaggct tcagggccag ggctgccccc tctgcctccc 1140 agcctgccca tcctggagag ttccctcctg gccccacaac ccaggagtcc acccctgaca 1200 tccccctcct cagcatcaat gtggggatcc cagagcctga ggccacagtc ccatggccca 1260 tcctcctgcc agcctggaag aactgggccc cagagtgagg acagacttgc aggtcagggg 1320 tcccagaggg cttcagccag agtgagaaca gtgaagagaa acagccctgt tcctctcccc 1380 tccttagagg ggagcagggc ttcactggct ctgccctttc ttctccagnn nnnnnnnnnn 1440 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1500 nnnnnnnnnn nnnnnnnnnn nnnnnnnnct ggctctgccc tttcttctcc agtgcccccc 1560 atggtgaatg tcacccgcag cgaggcctca gagggcaaca ttaccgtgac atgcagggct 1620 tctggcttct atccctggaa tatcacactg agctggcgtc aggatggggt atctttgagc 1680 cacgacaccc agcagtgggg ggatgtcctg cctgatggga atggaaccta ccagacctgg 1740 gtggccacca ggatttgcca aggagaggag cagaggttca cctgctacat ggaacacagc 1800 gggaatcaca gcactcaccc tgtgccctct gtgagcctag ggtgaccctg gagagggtca 1860 gaccagggta gggacagcag ggatggctgt ggctctctgc ccagtgtata acaagtccct 1920 tttttttcag ggaaagtgct ggtgcttcag agtcattggc agacattcca tgtttctgct 1980 gttgctgctg ctgctgctgc tgctgctgct atttttgtta ttattatttt ctacgtctgt 2040 tgttgtaaga agaaaacatc agctgcagag ggtccaggtg agaaaannnn nnnnnnnnnn 2100 nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 2160 nnnnnnnnnn nnnnnnnnnn nnnnnnagtg gagcatttac ccgtttccct cttttctcca 2220 gagctcgtga gcctgcaggt cctggatcaa cacccagttg ggacgagtga ccacagggat 2280 gccacacagc tcggatttca gcctctgatg tcagatcttg ggtccactgg ctccactgag 2340 ggcgcctaga ctctacagcc aggcagctgg gattcaattc cctgcctgga tctcacgag 2399 //