ID AH010545; SV 2; linear; gDNA; STD; HUM; 2223 BP.
XX
AC AH010545; AF336063-AF336064;
XX
DT 13-SEP-2012 (Rel. 201237-4, arrived in LIGM-DB)
DT 25-JUN-2015 (Rel. 201526-4, Last updated, Version 5)
XX
DE Homo sapiens MHC class I chain-related protein A (MICA) gene, MICA*002
DE allele, partial cds.
XX
KW Immunoglobulin superfamily (IgSF); RPI-MH1Like; RPI-MH1Like-Alpha;
KW Major histocompatibility superfamily (MhSF);
KW related protein of the immune system (RPI); regular; gDNA; undefined;
KW functional.
XX
OS Homo sapiens (human)
OC cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria;
OC Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi;
OC Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota;
OC Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates;
OC Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae;
OC Homo; Homo sapiens.
XX
RN [1]
RC Contact ncbi-contacts@bcm.tmc.edu for more information.
RP 1-2223
RA Rat Genome Sequencing Consortium;
RT ;
RL Submitted (11-JUL-2003) to the INSDC.
RL Human Genome Sequencing Center, Department of Molecular and Human Genetics,
RL Baylor College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
XX
RN [2]
RP 1-2223
RX DOI; 10.1038/sj.onc.1203604.
RX PUBMED; 10851082.
RA Saitou M., Sugimoto J., Hatakeyama T., Russo G., Isobe M.;
RT "Identification of the TCL6 genes within the breakpoint cluster region on
RT chromosome 14q32 in T-cell leukemia";
RL Oncogene 19(23):2796-2802(2000).
XX
DR ENA; AH010545.
XX
CC IMGT/LIGM-DB annotation level: keyword level
CC
CC On or before Jun 29, 2011 this sequence version replaced
CC gi:13346200, gi:13346201, gi:13346199.
XX
FH Key Location/Qualifiers (from EMBL)
FH
FT source 1..2223
FT /organism="Homo sapiens"
FT /chromosome="6"
FT /map="6p21.3"
FT /mol_type="genomic DNA"
FT /cell_line="YAR"
FT /db_xref="taxon:9606"
FT gene <1..>2223
FT /gene="MICA"
FT /allele="MICA*002"
FT mRNA join(<1..255,530..817,1405..1683,1784..1930,2038..>2223)
FT /gene="MICA"
FT /allele="MICA*002"
FT /product="MHC class I chain-related protein A"
FT CDS join(<1..255,530..817,1405..1683,1784..1930,2038..2165)
FT /codon_start=3
FT /gene="MICA"
FT /allele="MICA*002"
FT /product="MHC class I chain-related protein A"
FT /note="similar to protein encoded by GenBank Accession
FT Number U56941"
FT /db_xref="GOA:Q29983"
FT /db_xref="HGNC:7090"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR011162"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="PDB:1B3J"
FT /db_xref="PDB:1HYR"
FT /db_xref="UniProtKB/Swiss-Prot:Q29983"
FT /protein_id="AAK19622.1"
FT /translation="PHSLRYNLTVLSGDGSVQSGFLAEVHLDGQPFLRCDRQKCRAKPQ
FT GQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVCEIHEDNSTR
FT SSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADC
FT LQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDGVSL
FT SHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVPSGKVLVLQS
FT HWQTFHVSAVAAAAAAAAAIFVIIIFYVCCCKKKTSAAEGPELVSLQVLDQHPVGTSDH
FT RDATQLGFQPLMSDLGSTGSTEGA"
FT exon 1..255
FT /gene="MICA"
FT /allele="MICA*002"
FT /number=2
FT exon 530..817
FT /gene="MICA"
FT /allele="MICA*002"
FT /number=3
FT exon 1405..1683
FT /gene="MICA"
FT /allele="MICA*002"
FT /number=4
FT exon 1784..1930
FT /gene="MICA"
FT /allele="MICA*002"
FT /number=5
FT gap 1938..2037
FT /estimated_length=unknown
FT exon 2038..>2223
FT /gene="MICA"
FT /allele="MICA*002"
FT /number=6
FT 3'UTR 2166..>2223
FT /gene="MICA"
FT /allele="MICA*002"
XX
SQ Sequence 2223 BP; 479 A; 567 C; 637 G; 440 T; 100 other;
agccccacag tcttcgttat aacctcacgg tgctgtccgg ggatggatct gtgcagtcag 60
ggtttctcgc tgaggtacat ctggatggtc agcccttcct gcgctgtgac aggcagaaat 120
gcagggcaaa gccccaggga cagtgggcag aagatgtcct gggaaataag acatgggaca 180
gagagaccag ggacttgaca gggaacggaa aggacctcag gatgaccctg gctcatatca 240
aggaccagaa agaaggtgag agtcggcagg ggcaagagtg actggagagg ccttttccag 300
aaaagttagg ggcagagagc agggacctgt atctacccac tggatctggc tcaggctggg 360
ggtgaggaat gggggtcagt ggaactcagc agggaggtga gccggcactc agcccacaca 420
gggaggcatg gaggagggcc agggaggcgt accccctggg ctgagttcct cacttgggtg 480
gaaaggtgat gggttcggga atggagaagt cactgctggg tgggggcagg cttgcattcc 540
ctccaggaga ttagggtctg tgagatccat gaagacaaca gcaccaggag ctcccagcat 600
ttctactacg atggggagct cttcctctcc caaaacctgg agactgagga atggacaatg 660
ccccagtcct ccagagctca gaccttggcc atgaacgtca ggaatttctt gaaggaagat 720
gccatgaaga ccaagacaca ctatcacgct atgcatgcag actgcctgca ggaactacgg 780
cgatatctaa aatccggcgt agtcctgagg agaacaggta ccgacgctgg ccaggggctc 840
tcctctcctt ccaattctgc tagagttgcc tcacctccca gatgtgtcca gggaaaccct 900
ccctgtgcta tggatgaagg catttcctgt tggcacatcg tgtcctgatt ttcctctatt 960
gttagagcca ctggataaag acagtgggtc agggactgga ccatccagtg ttgtaatcag 1020
ggcaagtaga ggaccctccg acagaatcct gagcctgggg tgggtgtcag gcaggagagg 1080
aaggcttcag ggccagggct gccccctctg cctcccagcc tgcccatcct ggagagttcc 1140
ctcctggccc cacaacccag gagtccaccc ctgacatccc cctcctcagc atcaatgtgg 1200
ggatcccaga gcctgaggcc acagtcccat ggcccatcct cctgccagcc tggaagaact 1260
gggccccaga gtgaggacag acttgcaggt caggggtccc agagggcttc agccagagtg 1320
agaacagtga agagaaacag ccctgttcct ctcccctcct tagaggggag cagggcttca 1380
ctggctctgc cctttcttct ccagtgcccc ccatggtgaa tgtcacccgc agcgaggcct 1440
cagagggcaa cattaccgtg acatgcaggg cttctggctt ctatccctgg aatatcacac 1500
tgagctggcg tcaggatggg gtatctttga gccacgacac ccagcagtgg ggggatgtcc 1560
tgcctgatgg gaatggaacc taccagacct gggtggccac caggatttgc caaggagagg 1620
agcagaggtt cacctgctac atggaacaca gcgggaatca cagcactcac cctgtgccct 1680
ctggtgagcc tagggtgacc ctggagaggg tcaggccagg gtagggacag cagggatggc 1740
tgtggctctc tgcccagtgt ataacaagtc cctttttttt cagggaaagt gctggtgctt 1800
cagagtcatt ggcagacatt ccatgtttct gctgttgctg ctgctgctgc tgctgctgct 1860
gctatttttg ttattattat tttctacgtc tgttgttgta agaagaaaac atcagctgca 1920
gagggtccag gtgagaannn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn 1980
nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnagc 2040
tcgtgagcct gcaggtcctg gatcaacacc cagttgggac gagtgaccac agggatgcca 2100
cacagctcgg atttcagcct ctgatgtcag atcttgggtc cactggctcc actgagggcg 2160
cctagactct acagccaggc agctgggatt caattccctg cctggatctc acgagcactt 2220
tcc 2223
//