ID AF097403; SV 1; linear; cDNA; STD; HUM; 822 BP.
XX
AC AF097403;
XX
DT 29-MAR-2011 (Rel. 201113-2, arrived in LIGM-DB)
DT 18-DEC-2012 (Rel. 201251-2, Last updated, Version 4)
XX
DE Homo sapiens MHC class I chain-related protein A (MICA) gene, MICA-017
DE allele, partial cds.
XX
KW Immunoglobulin superfamily (IgSF); RPI-MH1Like; RPI-MH1Like-Alpha;
KW Major histocompatibility superfamily (MhSF);
KW related protein of the immune system (RPI); conventional-with-leader;
KW regular; cDNA; undefined; functional; L-nt-sequence.
XX
OS Homo sapiens (human)
OC cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria;
OC Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi;
OC Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota;
OC Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates;
OC Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae;
OC Homo; Homo sapiens.
XX
RN [1]
RP 1-822
RA Ishikawa Y., Wakui M.K.;
RT ;
RL Submitted (15-JUN-1998) to the INSDC.
RL Yoshihide Ishikawa, Japanese Red Cross Central Blood Center, Department of
RL Research; 4-1-31 Hiroo, Shibuya-Ku, Tokyo 150-0012, Japan
RL (E-mail:ishikawa@hla.cbc.jrc.or.jp, Tel:+81-3-3406-1211,
RL Fax:+81-3-3406-7892)
XX
RN [2]
RP 1-822
RA Fodil N., Pellet P., Theodorou I., Bahram S.;
RT ;
RL Submitted (21-SEP-1998) to the INSDC.
RL Centre de Recherche d'Immunologie et d'Hematologie, Faculte de Medecine, 4
RL rue Kirschleger, Strasbourg 67085, France
XX
DR ENA; AF097403.
DR IMGT/HLA; HLA01335; MICA*017.
XX
CC IMGT/LIGM-DB annotation level: by annotators
XX
FH Key Location/Qualifiers
FH
FT L-nt-SEQUENCE <1..>822
FT /partial
FT /allele_alias="HLA-DB allele name: MICA*017"
FT /chromosome="6"
FT /db_xref="taxon:9606"
FT /functional
FT /IMGT_allele="MICA*17"
FT /IMGT_gene="MICA"
FT /IMGT_map="6p21.33"
FT /organism="Homo sapiens"
FT L-CODING-REGION <1..>822
FT /partial
FT /translation="EPHSLRYNLTVLSGDGSVQSGFLAEVHLDGQPFLRCDRQKC
FT RAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLREIRVC
FT EIHEDNSTRSSQHFYYDGELFLSQNLETEEWTMPQSSRAQTLAMNVRNFLKEDAM
FT KTKTHYHAMHADCLQELRRYLKSGVVLRRTVPPMVNVTRSEASEGNITVTCRASG
FT FYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYM
FT EHSGNHSTHPVPS"
FT /db_xref="GOA:Q29983"
FT /db_xref="GOA:Q9TQ89"
FT /db_xref="HGNC:7090"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="PDB:1B3J"
FT /db_xref="PDB:1HYR"
FT /db_xref="UniProtKB/Swiss-Prot:Q29983"
FT /protein_id="AAD27006.1"
FT G-ALPHA1-LIKE 1..255
FT /translation="EPHSLRYNLTVLSGDGSVQSGFLAEVHLDGQPFLRCDRQKC
FT RAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKE"
FT /AA_IMGT="AA 1 to 86, AA 40 and 41 are missing, AA 54A
FT is present"
FT /IMGT_note="encoded by EX2"
FT G-ALPHA2-LIKE 256..543
FT /translation="GLHSLREIRVCEIHEDNSTRSSQHFYYDGELFLSQNLETEE
FT WTMPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADCLQELRRYLKSGVVLRRT
FT "
FT /AA_IMGT="AA 1 to 92, AA 17, 40, 41 and 87 are
FT missing, AA 49.1 to 49.5, 61A, 61B and 72A are present"
FT /IMGT_note="encoded by EX3"
FT SPLICE-FIRST-CODON 256..258
FT /splicing-frame="sf1"
FT C-LIKE 544..821
FT /translation="VPPMVNVTRSEASEGNITVTCRASGFYPWNITLSWRQDGVS
FT LSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHSGNHSTHPVP"
FT /AA_IMGT="AA 1.1 to 123, AA 14 to 16, 31, 34, 94 to 96
FT and 110 to 113 are missing, AA 1.1, 45.1 to 45.6, 84.1
FT to 84.4, 85.4 to 85.1 are present"
FT /IMGT_note="encoded by EX4"
FT SPLICE-FIRST-CODON 544..546
FT /splicing-frame="sf1"
XX
SQ Sequence 822 BP; 213 A; 218 C; 236 G; 155 T; 0 other;
gagccccaca gtcttcgtta taacctcacg gtgctgtccg gggatggatc tgtgcagtca 60
gggtttctcg ctgaggtaca tctggatggt cagcccttcc tgcgctgtga caggcagaaa 120
tgcagggcaa agccccaggg acagtgggca gaagatgtcc tgggaaataa gacatgggac 180
agagagacca gggacttgac agggaacgga aaggacctca ggatgaccct ggctcatatc 240
aaggaccaga aagaaggctt gcattccctc cgggagatta gggtctgtga gatccatgaa 300
gacaacagca ccaggagctc ccagcatttc tactacgatg gggagctctt cctctcccaa 360
aacctggaga ctgaggaatg gacaatgccc cagtcctcca gagctcagac cttggccatg 420
aacgtcagga atttcttgaa ggaagatgcc atgaagacca agacacacta tcacgctatg 480
catgcagact gcctgcagga actacggcga tatctaaaat ccggcgtagt cctgaggaga 540
acagtgcccc ccatggtgaa tgtcacccgc agcgaggcct cagagggcaa cattaccgtg 600
acatgcaggg cttctggctt ctatccctgg aatatcacac tgagctggcg tcaggatggg 660
gtatctttga gccacgacac ccagcagtgg ggggatgtcc tgcctgatgg gaatggaacc 720
taccagacct gggtggccac caggatttgc caaggagagg agcagaggtt cacctgctac 780
atggaacaca gcgggaatca cagcactcac cctgtgccct ct 822
//