ID AB015600; SV 1; linear; cDNA; STD; HUM; 822 BP.
XX
AC AB015600;
XX
DT 29-MAR-2011 (Rel. 201113-2, arrived in LIGM-DB)
DT 18-DEC-2012 (Rel. 201251-2, Last updated, Version 4)
XX
DE Homo sapiens MICA gene, partial cds.
XX
KW Immunoglobulin superfamily (IgSF); RPI-MH1Like; RPI-MH1Like-Alpha;
KW Major histocompatibility superfamily (MhSF);
KW related protein of the immune system (RPI); conventional-with-leader;
KW regular; cDNA; undefined; functional; L-nt-sequence.
XX
OS Homo sapiens (human)
OC cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria;
OC Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi;
OC Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota;
OC Mammalia; Theria; Eutheria; Boreoeutheria; Euarchontoglires; Primates;
OC Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae;
OC Homo; Homo sapiens.
XX
RN [1]
RP 1-822
RA Ishikawa Y., Wakui M.K.;
RT ;
RL Submitted (15-JUN-1998) to the INSDC.
RL Yoshihide Ishikawa, Japanese Red Cross Central Blood Center, Department of
RL Research; 4-1-31 Hiroo, Shibuya-Ku, Tokyo 150-0012, Japan
RL (E-mail:ishikawa@hla.cbc.jrc.or.jp, Tel:+81-3-3406-1211,
RL Fax:+81-3-3406-7892)
XX
RN [2]
RX DOI; 10.1016/S0165-2478(97)00101-6.
RX PUBMED; 9373213.
RA Fukuoka M., Tokushima M., Koarada S., Sai T., Miyake K., Kimoto M.;
RT "Analysis of Vbeta4 T cell receptor CDR3 repertoire in BALB/c and (NZB x
RT NZW)F1 mice";
RL Immunol. Lett. 59(2):63-69(1997).
XX
DR ENA; AB015600.
DR IMGT/HLA; HLA01334; MICA*019.
XX
CC IMGT/LIGM-DB annotation level: by annotators
XX
FH Key Location/Qualifiers
FH
FT L-nt-SEQUENCE <1..>822
FT /partial
FT /allele_alias="HLA-DB allele name: MICA*019"
FT /chromosome="6"
FT /db_xref="taxon:9606"
FT /functional
FT /IMGT_allele="MICA*19"
FT /IMGT_gene="MICA"
FT /IMGT_map="6p21.33"
FT /organism="Homo sapiens"
FT L-CODING-REGION <1..>822
FT /partial
FT /translation="EPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYDRQKC
FT RAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKEGLHSLQEIRVC
FT EIHEDNSTRSSQHFYYDGELFLSQNLETEEWTVPQSSRAQTLAMNVRNFLKEDAM
FT KTKTHYHAMHADCLQELRRYLESSVVLRRTVPPMVNVTRSEASEGNITVTCRASS
FT FYPRNIILTWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYM
FT EHSGNHSTHPVPS"
FT /db_xref="GOA:Q29983"
FT /db_xref="GOA:Q99692"
FT /db_xref="HGNC:7090"
FT /db_xref="InterPro:IPR001039"
FT /db_xref="InterPro:IPR003597"
FT /db_xref="InterPro:IPR007110"
FT /db_xref="InterPro:IPR011161"
FT /db_xref="InterPro:IPR013783"
FT /db_xref="PDB:1B3J"
FT /db_xref="PDB:1HYR"
FT /db_xref="UniProtKB/Swiss-Prot:Q29983"
FT /protein_id="BAA29034.1"
FT G-ALPHA1-LIKE 1..255
FT /translation="EPHSLRYNLTVLSWDGSVQSGFLAEVHLDGQPFLRYDRQKC
FT RAKPQGQWAEDVLGNKTWDRETRDLTGNGKDLRMTLAHIKDQKE"
FT /AA_IMGT="AA 1 to 86, AA 40 and 41 are missing, AA 54A
FT is present"
FT /IMGT_note="encoded by EX2"
FT G-ALPHA2-LIKE 256..543
FT /translation="GLHSLQEIRVCEIHEDNSTRSSQHFYYDGELFLSQNLETEE
FT WTVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAMHADCLQELRRYLESSVVLRRT
FT "
FT /AA_IMGT="AA 1 to 92, AA 17, 40, 41 and 87 are
FT missing, AA 49.1 to 49.5, 61A, 61B and 72A are present"
FT /IMGT_note="encoded by EX3"
FT SPLICE-FIRST-CODON 256..258
FT /splicing-frame="sf1"
FT C-LIKE 544..822
FT /translation="VPPMVNVTRSEASEGNITVTCRASSFYPRNIILTWRQDGVS
FT LSHDTQQWGDVLPDGNGTYQTWVATRICRGEEQRFTCYMEHSGNHSTHPVPS"
FT /AA_IMGT="AA 1.1 to 123, AA 14 to 16, 31, 34, 94 to 96
FT and 110 to 113 are missing, AA 1.1, 45.1 to 45.6, 84.1
FT to 84.4, 85.4 to 85.1 are present"
FT /IMGT_note="encoded by EX4"
FT SPLICE-FIRST-CODON 544..546
FT /splicing-frame="sf1"
XX
SQ Sequence 822 BP; 214 A; 220 C; 233 G; 155 T; 0 other;
gagccccaca gtcttcgtta taacctcacg gtgctgtcct gggatggatc tgtgcagtca 60
gggtttcttg ctgaggtaca tctggatggt cagcccttcc tgcgctatga caggcagaaa 120
tgcagggcaa agccccaggg acagtgggca gaagatgtcc tgggaaataa gacatgggac 180
agagagacca gggacttgac agggaacgga aaggacctca ggatgaccct ggctcatatc 240
aaggaccaga aagaaggctt gcattccctc caggagatta gggtctgtga gatccatgaa 300
gacaacagca ccaggagctc ccagcatttc tactacgatg gggagctctt cctctcccaa 360
aacctggaga ctgaggaatg gacagtgccc cagtcctcca gagctcagac cttggccatg 420
aacgtcagga atttcttgaa ggaagatgcc atgaagacca agacacacta tcacgctatg 480
catgcagact gcctgcagga actacggcga tatctagaat ccagcgtagt cctgaggaga 540
acagtgcccc ccatggtgaa tgtcacccgc agcgaggcct cagagggcaa catcaccgtg 600
acatgcaggg cttccagctt ctatccccgg aatatcatac tgacctggcg tcaggatggg 660
gtatctttga gccacgacac ccagcagtgg ggggatgtcc tgcctgatgg gaatggaacc 720
taccagacct gggtggccac caggatttgc cgaggagagg agcagaggtt cacctgctac 780
atggaacaca gcgggaatca cagcactcac cctgtgccct ct 822
//