Dbfetch
ID HLA01856; SV 2; standard; DNA; HUM; 4301 BP. XX AC HLA01856; XX SV HLA01856.2 XX DT 31-JAN-2004 (Rel. 2.5.0, Created, Version 1) DT 16-JAN-2024 (Rel. 3.55.0, Last Updated, Version 2) XX DE HLA-C*05:09:01, Human MHC Class I sequence XX KW Human MHC; HLA; Class I; HLA-C; Allele; HLA-C*05:09:01; XX OS Homo Sapiens (human) OC Eukaryota; Metazoa; Chordata; Vertebrata; Mammalia; Eutheria; Primates; OC Catarrhini; Hominidae; Homo. XX CC -------------------------------------------------------------------------- CC IPD-IMGT/HLA Release Version 3.55.0 CC -------------------------------------------------------------------------- CC Copyrighted by the IPD-IMGT/HLA Database, Distributed under the Creative CC Commons Attribution-NoDerivs License, see; CC http://www.ebi.ac.uk/ipd/imgt/hla/licence/ for further details. CC -------------------------------------------------------------------------- XX RN [1] RP 1-4301 RX PUBMED; 11580854. RA Santos S, Vicario JL, Garcia-Sanchez F, Aviles MJ, Balas A; RT "Sequencing based typing for HLA-C. Identification of three new alleles: RT Cw*0307, Cw*0502 and Cw*0504."; RL Tissue Antigens 58:34-37(2001). XX RN [2] RP 1-4301 RX PUBMED; 15663747. RA Lebedeva TV, Ohashi M, Huang A, Vasconcellos S, Flesch S, Yu N; RT "Emerging new alleles suggest high diversity of HLA-C locus."; RL Tissue Antigens 65:101-106(2005). XX CC -------------------------------------------------------------------------- CC The sequence below is the official allele sequence as approved by the CC WHO Nomenclature Committee for Factors of the HLA System. CC Any cross references may differ from the sequence shown below. CC -------------------------------------------------------------------------- XX DR EMBL; AF047366; AF047366.2. DR EMBL; AF047367; AF047367.2. DR EMBL; AH005907; AH005907.3. DR EMBL; AJ616768; AJ616768.1. DR EMBL; AJ616769; AJ616769.1. DR EMBL; AY973960; AY973960.1. DR EMBL; GQ387160; GQ387160.1. DR EMBL; HQ386855; HQ386855.1. DR EMBL; MK279532; MK279532.1. DR EMBL; MN640680; MN640680.1. XX FH Key Location/Qualifiers FH FT source 1..4301 FT /organism="Homo sapiens" FT /mol_type="genomic DNA" FT /db_xref="taxon:9606" FT /ethnic="Admixed, European, Hispanic or Latin American, Undefined" FT /cell_line="223724" FT /cell_line="BY01670" FT /cell_line="CS00022" FT /cell_line="CS00047" FT /cell_line="CTM-5957411" FT /cell_line="CTM2682049" FT /cell_line="NT02403" FT /cell_line="NT02404" FT CDS join(495..567,698..967,1214..1489,2077..2352,2474..2593, FT 3033..3065,3173..3220,3385..3389) FT /codon_start=1 FT /gene="HLA-C" FT /allele="HLA-C*05:09:01" FT /product="MHC Class I HLA-C*05:09:01 sequence" FT /translation="MRVMAPRTLILLLSGALALTETWACSHSMRYFYTAVSRPGRGEPR FT FIAVGYVDDTQFVQFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVNLRK FT LRGYYNQSEAGSHTLQRMYGCDLGPDGRLLRGYNQFAYDGKDYIALNEDLRSWTAADKA FT AQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHE FT ATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGEEQRY FT TCHVQHEGLPEPLTLRWGPSSQPTIPIVGIVAGLAVLAVLAVLGAVMAVVMCRRKSSGG FT KGGSCSQAASSNSAQGSDESLIACKA" FT UTR 1..494 FT exon 495..567 FT /number="1" FT intron 568..697 FT /number="1" FT exon 698..967 FT /number="2" FT intron 968..1213 FT /number="2" FT exon 1214..1489 FT /number="3" FT intron 1490..2076 FT /number="3" FT exon 2077..2352 FT /number="4" FT intron 2353..2473 FT /number="4" FT exon 2474..2593 FT /number="5" FT intron 2594..3032 FT /number="5" FT exon 3033..3065 FT /number="6" FT intron 3066..3172 FT /number="6" FT exon 3173..3220 FT /number="7" FT intron 3221..3384 FT /number="7" FT exon 3385..3389 FT /number="8" FT UTR 3390..4301 SQ Sequence 4301 BP; 839 A; 1202 C; 1292 G; 968 T; 0 other; tattttgctg gatgtagttt aatattacct gaggtaaggt aaggcaaaga gtgggaggca 60 gggagtccag ttcagggacg gggattccag gagaagtgaa ggggaagggg ctgggcgcag 120 cctgggggtc tctccctggt ttccacagac agatccttgg ccaggactca ggcacacagt 180 gtgacaaaga tgcttggtgt aggagaagag ggatcaggac gaagtcccag gtcccgggcg 240 gggctctcag ggtctcaggc tccaagggcc gtgtctgcac tggggaggcg ccgcgttgag 300 gattctccac tcccctgagt ttcacttctt cttccaacct gcgtcgggtc cttcttcctg 360 aatactcatg acgcgtcccc aattcccact cccattgggt gtcgggttct agagaagcca 420 atcagcgtct ccgcagtccc ggttctaaag tccccagtca cccacccgga ctcggattct 480 ccccagacgc cgagatgcgg gtcatggcgc cccgaaccct catcctgctg ctctcgggag 540 ccctggccct gaccgagacc tgggcctgtg agtgcgaggt tgggagggaa acggcctctg 600 cggagaggag cgaggggccc gcccggcgag ggcgcaggac ccggggagcc gcgcagggag 660 gagggtcggg cgggtctcag cccctcctcg cccccaggct cccactccat gaggtatttc 720 tacaccgccg tgtcccggcc cggccgcgga gagccccgct tcatcgcagt gggctacgtg 780 gacgacacgc agttcgtgca gttcgacagc gacgccgcga gtccaagagg ggagccgcgg 840 gcgccgtggg tggagcagga ggggccggag tattgggacc gggagacaca gaagtacaag 900 cgccaggcac agactgaccg agtgaacctg cggaaactgc gcggctacta caaccagagc 960 gaggccggtg agtgaccccg gcccggggcg caggtcacga cccctcccca tcccccacgg 1020 acggcccggg tcgccccgag tctcccggtc tgagatccac cccgaggctg cggaacccgc 1080 ccagaccctc gaccggagag agccccagtc acctttaccc ggtttcattt tcagtttagg 1140 ccaaaatccc cgcgggttgg tcggggctgg ggcggggctc gggggacggg gctgaccacg 1200 ggggcggggc cagggtctca caccctccag aggatgtatg gctgcgacct ggggcccgac 1260 gggcgcctcc tccgcgggta taaccagttc gcctacgacg gcaaggatta catcgccctg 1320 aatgaggacc tgcgctcctg gaccgccgcg gacaaggcgg ctcagatcac ccagcgcaag 1380 tgggaggcgg cccgtgaggc ggagcagcgg agagcctacc tggagggcac gtgcgtggag 1440 tggctccgca gatacctgga gaacgggaag gagacgctgc agcgcgcggg taccaggggc 1500 agtggggagc cttccccatc tcctgtagat ctcccgggat ggcctcccac gaggagggga 1560 ggaaaatggg atcagcgctg gaatatcgcc ctcccttgaa tggagaatgg gatgagtttt 1620 cctgagtttc ttctgagggc cccctctgct ctctaggaca attaagggat gaagtccttg 1680 aggaaatgga ggggaagaca gtccctggaa tactgatcag gggtcccctt tgaccacttt 1740 gaccactgca gcagctgtgg tcaggctgct gacctttctc tcaggccttg ttctctgcct 1800 cacgctcaat gtgtttaaag gtttgattcc agcttttctg agtccttcgg cctccactca 1860 ggtcaggacc agaagtcgct gttcctccct cagagactag aactttccaa tgaataggag 1920 attatcccag gtgcctgtgt ccaggctggc gtctgggttc tgtgccccct tccccacccc 1980 aggtgtcctg tccattctca ggatggtcac atgggcactg ttggagtgtc gcaagagaga 2040 tacaaagtgt ctgaattttc tgactcttcc cgtcagaaca cccaaagaca cacgtgaccc 2100 accatcccgt ctctgaccat gaggccaccc tgaggtgctg ggccctgggc ttctaccctg 2160 cggagatcac actgacctgg cagcgggatg gcgaggacca aactcaggac accgagcttg 2220 tggagaccag gccagcagga gatggaacct tccagaagtg ggcagctgtg gtggtgcctt 2280 ctggagaaga gcagagatac acgtgccatg tgcagcacga ggggctgcca gagcccctca 2340 ccctgagatg gggtaaggag ggggatgagg ggtcatgtgt cttctcaggg aaagcagaag 2400 tcctggagcc cttcagccgg gtcagggctg aggcttgggg gtcagggccc ctcaccttcc 2460 cctcctttcc cagggccatc ttcccagccc accatcccca tcgtgggcat cgttgctggc 2520 ctggctgtcc tggctgtcct agctgtccta ggagctgtga tggctgttgt gatgtgtagg 2580 aggaagagct caggtaggga aggggtgagg agtggggtct gggttttctt gtcccactgg 2640 gagtttcaag ccccaggtag aagtgtgccc cacctcgtta ctggaagcac catccacaca 2700 tgggccatcc cagcctggga ccctgtgtgc tagcacttac tctgttgtga agcacatgac 2760 aatgaaggac agatgtatca ccttgatgat tatggtgttg gggtccttga ttccagcatt 2820 catgagtcag gggaaggtcc ctgctaagga cagaccttag gagggcagtt gctccagaac 2880 ccacagctgc tttccccgtg tttcctgatc ctgccctggg tctgcagtca tagttctgga 2940 aacttctctt gggtccaaga ctaggaggtt cccctaagat cgcatggccc tgcctcctcc 3000 ctgtcccctc acagggcatt ttcttcccac aggtggaaaa ggagggagct gctctcaggc 3060 tgcgtgtaag tgatggcggt gggcgtgtgg aggagctcac ccaccccata attcctcttg 3120 tcccacatct cctgcgggct ctgaccaggt cttttttttt gttctacccc agccagcaac 3180 agtgcccagg gctctgatga gtctctcatc gcttgtaaag gtgagattct ggggagctga 3240 agtggtcggg ggtggggcag agggaaaagg cctaggtaat ggggatcctt tgattgggac 3300 gtttcgaatg tgtggtgagc tgttcagagt gtcatcactt accatgactg acctgaattt 3360 gttcatgact attgtgttct gtagcctgag acagctgcct gtgtgggact gagatgcagg 3420 atttcttcac acctttcctt tgtgacttca agagcctctg gcatctcttt ctgcaaaggc 3480 atctgaatgt gtctgcgttc ctgttagcat aatgtgagga ggtggagaga cagcccaccc 3540 ccgtgtccac cgtgacccct gtccccacac tgacctgtgt tccctccccg atcatctttc 3600 ctgttccaga gaagtgggct ggatgtctcc atctctgtct caactttacg tgtactgagc 3660 tgcaacttct tacttcccta ctgaaaataa gaatctgaat ataaatttgt tttctcaaat 3720 atttgctatg agaggttgat ggattaatta aataagtcaa ttcctggaag ttgagagagc 3780 aaataaagac ctgagaacct tccagaatcc gcatgttcgc tgtgctgagt ctgttgcagg 3840 tgggggtggg gaaggctgtg aggagacgag tgtggacggg gcctgtgcct agttgctgtt 3900 cagttcttca tgggctttat gtggtcagtc ctcagctggg tcaccttcac tgctccattg 3960 tccttgtccc ttcagtggaa acttgtccag cgggagctgt gaccacagag gctcacacat 4020 cgcccagggc agcccctgca cacgggagtc cctgtgcttt ctgagacaaa ttttcagacc 4080 cattcagctc ctgccctcct tctagggctc ctcttctgct ttggtctcct gccctctctc 4140 ccttccctga ttccagtaat cttcgtgctg actccaatcc caactcatga atctaaagca 4200 gagcctaatt tagatttata tttgtttgta aaattgggtc catagtctag aattgttcct 4260 tcctgaagag agaaacctga ttgtgtgctg cagtgtgcgg g 4301 //