###################################################################### # dbfetch database information - YAML # # http://www.ebi.ac.uk/Tools/dbfetch/dbfetch/dbfetch.databases # Wed Oct 02 18:50:40 BST 2013 ###################################################################### edam: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo aliasList: [edam_ontology, EDAM_data, EDAM_format, EDAM_identifier, EDAM_operation, EDAM_topic, 'MIR:00000189'] dataResourceInfoList: - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/ontoget.html', name: EMBOSS ontoget} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/ontotext.html', name: EMBOSS ontotext} databaseTerms: ['EDAM_topic:0770', 'MIR:00000189'] defaultFormat: obo description: EMBRACE Data and Methods (EDAM) Ontology. displayName: EDAM exampleIdentifiers: idList: [0338, '1929', 'EDAM_operation:0338', 'EDAM_format:1929', 0000338, 0001929] formatInfoList: - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2549', text] dataTerms: ['EDAM_data:2858'] name: default styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:2549'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2549', text] dataTerms: ['EDAM_data:2858'] name: obo styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:2549'] href: http://edamontology.sourceforge.net/ name: edam embl: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo aliasList: [emnew, emall, em_new, em_all, emenv, emest, emfun, emgss, emhtc, emhtg, emhum, eminv, emmam, emmus, emom, emov, emorg, empat, emphg, empln, empro, emrod, emstd, emsts, emsyn, emtgn, emtpa, emtsa, emunc, emvrl, emvrt, emwgs, em_om, em_ov, em_ph, em_pl, em_ro, em_sy, em_un, em_vi, em_env, em_fun, em_hum, em_inv, em_mam, em_mus, em_org, em_phg, em_pln, em_pro, em_rod, em_syn, em_tgn, em_unc, em_vrl, em_vrt, em_est, em_gss, em_htc, em_htg, em_pat, em_std, em_sts, em_tpa, em_tsa, em_wgs, ddbj, genbank, emb, dbj, gb, evec, emvec, em_vec, emblrelease, emblrelease_standard, emblrelease_tsa, emblrelease_wgs, emblnew, emblnew_standard, emblnew_tsa, emblnew_wgs, embldeleted, emblestrelease, embldeletedrelease, embltsa, embltsanew, embltsarelease, emblwgs, emblwgsnew, emblwgsrelease, emblwgsrelease_aa, emblwgsrelease_ab, emblwgsrelease_ac, emblwgsrelease_ad, emblwgsrelease_ae, emblwgsrelease_af, emblwgsrelease_ag, emblwgsrelease_ah, emblwgsrelease_ai, emblwgsrelease_aj, emblwgsrelease_ak, emblwgsrelease_al, emblwgsrelease_am, emblwgsrelease_etc, patent_dna, embl-bank, embl_bank, xembl, 'MIR:00000029', insd, insdc, 'DRCAT:EMBL'] dataResourceInfoList: - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.ebi.ac.uk/ena/', name: ENA Browser} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.ebi.ac.uk/cgi-bin/sva/sva.pl', name: EMBL-SVA} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.ncbi.nlm.nih.gov/books/NBK1763/', name: NCBI BLAST blastdbcmd} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.dkfz.de/srs/', name: SRS@DKFZ} databaseTerms: ['EDAM_topic:3042', 'MIR:00000029', 'DRCAT:EMBL'] defaultFormat: embl description: EMBL Nucleotide Sequence Database, Europe's primary nucleotide sequence resource. 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The patent equivalents are obtained from the patent numbers cited in the major sequence databases (e.g. EMBL-Bank and Patent Proteins), which are them expanded into a set of patent equivalents forming a WIPO Simple Patent Family. displayName: Patent Equivalents exampleIdentifiers: idList: ['10517942'] formatInfoList: - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: [patentequivalents] name: default styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: [patentequivalents] name: patent_equivalents styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} href: http://www.ebi.ac.uk/patentdata/ name: patent_equivalents pdb: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo aliasList: [msd, pdbe, pdbj, pre_pdb, 'MIR:00000020', 'DRCAT:PDB'] dataResourceInfoList: - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/seqret.html', name: EMBOSS seqret} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'ftp://ftp.ebi.ac.uk/pub/databases/rcsb/', name: PDB FTP@EMBL-EBI} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.ebi.ac.uk/pdbe/', name: PDBe} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.rcsb.org/pdb/', name: RCSB PDB} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.pdbj.org/', name: PDBj} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.wwpdb.org/', name: wwPDB} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'ftp://ftp.ebi.ac.uk/pub/databases/msd/pdb_uncompressed/', name: PDBe FTP@EMBL-EBI} databaseTerms: ['EDAM_topic:3038', 'MIR:00000020', 'DRCAT:PDB'] defaultFormat: pdb description: Macromolecular structures from the Brookhaven Protein Data Bank (PDB). Contains protein and nucleotide structure and sequence data. displayName: PDB exampleIdentifiers: idList: [101D, 1GAG, 10MH, 3E3Q, 3E3Q_A, 3E3Q_a, 3E3QA, 3E3Qa] formatInfoList: - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1476', ent] dataTerms: ['EDAM_data:0883'] name: default styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1476'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1954', pearson, fa] dataTerms: ['EDAM_data:2043'] name: fasta styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1954'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1475'] dataTerms: ['EDAM_data:2765'] name: annot styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1475'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1477', cif] dataTerms: ['EDAM_data:0883'] name: mmcif styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1477'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1476', ent] dataTerms: ['EDAM_data:0883'] name: pdb styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1476'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1478', xml] dataTerms: ['EDAM_data:0883'] name: pdbml styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:1478'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: [rdf] name: rdfxml styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} href: http://www.ebi.ac.uk/pdbe/ name: pdb refseqn: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo aliasList: [refseqnew, refseqrelease, refseqgen, refseqgennew, refseqgenrel] dataResourceInfoList: - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://eutils.ncbi.nlm.nih.gov/', name: NCBI E-utilities} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.dkfz.de/srs/', name: SRS@DKFZ} databaseTerms: ['EDAM_topic:3042', 'MIR:00000039', 'DRCAT:RefSeq'] defaultFormat: refseq description: The NCBI Reference Sequence project (RefSeq) provides reference sequence standards for the naturally occurring molecules of the central dogma, from chromosomes to mRNAs to proteins. displayName: RefSeq (nucleotide) exampleIdentifiers: accessionList: [AC_000014, NC_004952, NG_000869, NM_000231, NR_000003, NS_000193, NT_113950, NW_001031896, NZ_JH621247, XM_001000025] idList: ['110189662', '32455353', '149879847', '209529740'] sequenceVersionList: [AC_000014.1, NC_004952.1, NG_000869.2, NM_000231.2] formatInfoList: - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1936', genbank, gb] dataTerms: ['EDAM_data:2889'] name: default styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1936'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1936'] dataTerms: ['EDAM_data:0855'] name: annot styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1936'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2330'] dataTerms: ['EDAM_data:2018'] name: entrysize styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:2330'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1954', pearson, fa] dataTerms: ['EDAM_data:2043'] name: fasta styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1954'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2185', insdxml-1.4] dataTerms: ['EDAM_data:2889'] name: insdxml styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2185'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1936', genbank, gb] dataTerms: ['EDAM_data:2889'] name: refseq styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1936'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332', seqxml-0.4] dataTerms: ['EDAM_data:2046'] name: seqxml styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2332'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332'] dataTerms: ['EDAM_data:2043'] name: tinyseq styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2332'] href: http://www.ncbi.nlm.nih.gov/refseq/ name: refseqn refseqp: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo aliasList: [refseqpnew, refseqprelease, refseqprot, refseqprotnew, refseqprotrel] dataResourceInfoList: - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://eutils.ncbi.nlm.nih.gov/', name: NCBI E-utilities} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.dkfz.de/srs/', name: SRS@DKFZ} databaseTerms: ['EDAM_topic:3043', 'MIR:00000039', 'DRCAT:RefSeq'] defaultFormat: refseqp description: The NCBI Reference Sequence project (RefSeq) provides reference sequence standards for the naturally occurring molecules of the central dogma, from chromosomes to mRNAs to proteins. displayName: RefSeq (protein) exampleIdentifiers: accessionList: [AP_000130, NP_001075859, XP_001001333, YP_001876438] idList: ['56160459', '126723201'] sequenceVersionList: [AP_000130.1, NP_001075859.1] formatInfoList: - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1936', genpept, genbank, gb] dataTerms: ['EDAM_data:2888'] name: default styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1936'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1958', 'EDAM_format:1936'] dataTerms: ['EDAM_data:0855'] name: annot styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1958', 'EDAM_format:1936'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2330'] dataTerms: ['EDAM_data:2018'] name: entrysize styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:2330'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1954', pearson, fa] dataTerms: ['EDAM_data:2043'] name: fasta styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1954'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2185', insdxml-1.4] dataTerms: ['EDAM_data:2888'] name: insdxml styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2185'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1936', genpept, genbank, gb] dataTerms: ['EDAM_data:2888'] name: refseqp styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1936'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332', seqxml-0.4] dataTerms: ['EDAM_data:2047'] name: seqxml styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2332'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332'] dataTerms: ['EDAM_data:2043'] name: tinyseq styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2332'] href: http://www.ncbi.nlm.nih.gov/refseq/ name: refseqp sgt: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo aliasList: [targetdb] dataResourceInfoList: - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://srs.ebi.ac.uk/', name: SRS@EMBL-EBI} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.ncbi.nlm.nih.gov/books/NBK1763/', name: NCBI BLAST blastdbcmd} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/seqret.html', name: EMBOSS seqret} databaseTerms: ['EDAM_topic:3038'] defaultFormat: sgtxml description: Structural Genomics Targets (SGT) is a protein target registration database, providing information on the experimental progress and status of target amino acid sequences selected for structural determination. displayName: SGT exampleIdentifiers: idList: ['1', '283832', APC4091, IGBMC-0038-000, IPRv2949cPALZ, YCL050c] formatInfoList: - 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There are three different non-redundant databases with different sequence identity cut-offs. In UniRef100, UniRef90 and UniRef50 databases no pair of sequences in the representative set has >100%, >90% or >50% mutual sequence identity. The three UniRef databases allow the user to choose between a fast search and a truly comprehensive one. displayName: UniRef90 exampleIdentifiers: idList: [UniRef90_P06213] formatInfoList: - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332', uniref90xml, xml] dataTerms: ['EDAM_data:2888'] name: default styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:2332'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1954', pearson, fa] dataTerms: ['EDAM_data:2047'] name: fasta styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1954'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332', seqxml-0.4] dataTerms: ['EDAM_data:2047'] name: seqxml styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2332'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332', 'EDAM_format:2376', uniref90rdfxml, uniref90rdf, rdfxml, rdf] dataTerms: ['EDAM_data:0849', 'EDAM_data:1208'] name: uniprotrdfxml styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2332', 'EDAM_format:2376'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332', uniref90xml, xml] dataTerms: ['EDAM_data:2888'] name: uniref90 styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/xml, name: raw} syntaxTerms: ['EDAM_format:2332'] href: http://www.uniprot.org/ name: uniref90 unisave: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo aliasList: [uniprotkb_sequence_annotation_version_archive, 'DRCAT:UniSave'] dataResourceInfoList: - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.ebi.ac.uk/uniprot/unisave/', name: UniSave} databaseTerms: ['EDAM_topic:3043', 'MIR:00000005', 'DRCAT:UniSave'] defaultFormat: uniprot description: The UniProtKB Sequence/Annotation Version Archive (UniSave) is a repository of UniProtKB/Swiss-Prot and UniProtKB/TrEMBL entry versions. displayName: UniSave exampleIdentifiers: accessionList: [P06213] entryVersionList: [P06213.157, P06213.3] nameList: [INSR_HUMAN] formatInfoList: - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1977', swissprot, swiss] dataTerms: ['EDAM_data:2888'] name: default styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1977'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1977'] dataTerms: ['EDAM_data:0855', 'EDAM_data:1230'] name: annot styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1977'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2330'] dataTerms: ['EDAM_data:2018'] name: entrysize styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:2330'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1954', pearson, fa] dataTerms: ['EDAM_data:2047'] name: fasta styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1954'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1977', swissprot, swiss] dataTerms: ['EDAM_data:2888'] name: uniprot styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1977'] href: http://www.ebi.ac.uk/uniprot/unisave/ name: unisave uspto_prt: !!uk.ac.ebi.jdbfetch.info.DatabaseInfo aliasList: [uspto_patent_proteins, uspto_proteins, usptoprt, uspop, uspo_prt, uspto] dataResourceInfoList: - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.ebi.ac.uk/ebisearch/', name: EB-eye} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/entret.html', name: EMBOSS entret} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://www.ncbi.nlm.nih.gov/books/NBK1763/', name: NCBI BLAST blastdbcmd} - !!uk.ac.ebi.jdbfetch.info.DataResourceInfo {href: 'http://emboss.sourceforge.net/apps/cvs/emboss/apps/seqret.html', name: EMBOSS seqret} databaseTerms: ['EDAM_topic:3043'] defaultFormat: embl description: Protein sequences appearing in patents from the United States Patent and Trademark Office (USPTO). displayName: USPTO Proteins exampleIdentifiers: accessionList: [AAA00053] nameList: [I02590] sequenceVersionList: [AAA00053.1] formatInfoList: - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1927', swissprot, swiss, em] dataTerms: ['EDAM_data:2888'] name: default styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1927'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1927'] dataTerms: ['EDAM_data:0855'] name: annot styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1927'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1927', swissprot, swiss, em] dataTerms: ['EDAM_data:2888'] name: embl styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1927'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2330'] dataTerms: ['EDAM_data:2018'] name: entrysize styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:2330'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:1954', pearson, fa] dataTerms: ['EDAM_data:2047'] name: fasta styleInfoList: - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: default} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/html, name: html} - !!uk.ac.ebi.jdbfetch.info.StyleInfo {mimeType: text/plain, name: raw} syntaxTerms: ['EDAM_format:1954'] - !!uk.ac.ebi.jdbfetch.info.FormatInfo aliases: ['EDAM_format:2332', seqxml-0.4] dataTerms: ['EDAM_data:2047'] name: seqxml styleInfoList: - 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