Class Biojs.wigExplorer

Version 1.0.0.

Extends Biojs.

Defined in: Biojs.wigExplorer.js.

Class Summary
Constructor Attributes	Constructor Name and Description
	Biojs.wigExplorer(options) This component uses the D3 library to visualise a wig formatted file as an area chart, with panning and zooming functionality.

Field Summary
Field Attributes	Field Name and Description
<inner>	eventTypes Array containing the supported event names
<inner>	opt Default values for the options

Method Summary
Method Attributes	Method Name and Description
	constructor(options)
	paintFeatures(dataSet) Paint the features according to the values specified in the json object defined when creating the object.

Methods borrowed from class Biojs:: addListener, extend, getId, listen, raiseEvent, setEventHandlers, setOptions

Class Detail

Biojs.wigExplorer(options)

This component uses the D3 library to visualise a wig formatted file as an area chart, with panning and zooming functionality.
Author: Anil Thanki.

var instance = new Biojs.wigExplorer({
     target: "YourOwnDivId",
     selectionBackgroundColor: '#99FF00',
     dataSet: "../biojs/data/wigExplorerDataSet.tsv"
});

Parameters:
{Object} options: An object with the options for wigExplorer component.

Options detailed:

{string} target

Identifier of the DIV tag where the component should be displayed.

{string} [fontFamily='"Andale

mono", courier, monospace'] Font list to be applied to the component content.

{string} [fontColor="white"]

HTML color code for the font.

{string} [backgroundColor="#7BBFE9"]

Background color for the entire div content.

{Object} [selectionFontColor="white"]

This color will be used to change the font color of selected text.

{Object} [selectionBackgroundColor="yellow"]

This color will be used to change the background of selected text.

{string} dataSet

File in TSV format including input data. Example of TSV file ...

start    value
 10    34
 20    41
 30    46
 40    49
 ...

Requires:: D3; jQuery UI 1.8.2+; jQuery Core 1.6.4; biojs.wigExplorer.css; jQuery UI CSS 1.8.2

Field Detail

<inner> eventTypes

Array containing the supported event names

<inner> opt

Default values for the options

Method Detail

constructor(options)

Parameters:
options

paintFeatures(dataSet)

Paint the features according to the values specified in the json object defined when creating the object. This method initializes the holder, paints the slider and print button depending on the options, and paints the features and legend.

instance.paintFeatures("../biojs/data/wigExplorerDataSet2.tsv");

Parameters:

{string} dataSet

Location of the file with the input data in TSV format.

start    value
 10    34
 20    41
 30    46
 40    49
 ...

Classes

Class Biojs.wigExplorer