Class Biojs.HpaSummaryFeatures

Version 1.0.0.

Extends Biojs.HpaSummaryFeature.

Defined in: Biojs.HpaSummaryFeatures.js.

Class Summary
Constructor Attributes	Constructor Name and Description
	Biojs.HpaSummaryFeatures(options) Component to represent Human Protein Atlas summary protein expression information from a DAS XML

Field Summary
Field Attributes	Field Name and Description
<inner>	eventTypes Array containing the supported event names
<inner>	opt Default values for the options

Method Summary
Method Attributes	Method Name and Description
	constructor(options)
	setHpaDasUrl(hpaDasUrl) Set an URL with HPA DAS XML to start the query and visualization of HPA summary features

Methods borrowed from class Biojs:: addListener, extend, getId, listen, raiseEvent, setEventHandlers, setOptions

Event Summary
Event Attributes	Event Name and Description
	onRequestError(actionPerformed)

Events borrowed from class Biojs.HpaSummaryFeature:: onFeatureSelected

Class Detail

Biojs.HpaSummaryFeatures(options)

Component to represent Human Protein Atlas summary protein expression information from a DAS XML
Author: Rafael C Jimenez.

var instance = new Biojs.HpaSummaryFeatures({
	  target: 'YourOwnDivId',
	  hpaDasUrl: 'http://das.proteinatlas.org/das/proteinatlas/features?segment=Q9NTI5',
	  width: '585px',
	  imageWidth: '150px'
});

Parameters:
{Object} options: An object with the options for this component.

Options detailed:
{string} target: Identifier of the DIV tag where the component should be displayed.
{string} hpaDasUrl: Url pointing to an XML including HPA infomration in DAS format
{string} width: [900px] List of points including summary information for this feature
{string} imageWidth: [200px] List of points including summary information for this feature
{string} [proxyUrl='../biojs/dependencies/proxy/proxy.php']: Since the same origin policy (http://en.wikipedia.org/wiki/Same_origin_policy) in the browsers Biojs include a proxy script in PHP which redirects Ajax requests from local to any other domain. You can use tour own proxy script by modifying this value.

Requires:: Biojs.HpaSummaryFeature.css

Field Detail

<inner> eventTypes

Array containing the supported event names

<inner> opt

Default values for the options

Method Detail

constructor(options)

Parameters:
options

setHpaDasUrl(hpaDasUrl)

Set an URL with HPA DAS XML to start the query and visualization of HPA summary features

instance.setHpaDasUrl("http://www.ebi.ac.uk/~rafael/web/copa/biojs/src/test/data/Q9NTI5_hpa_summary.xml");

instance.setHpaDasUrl("http://www.ebi.ac.uk/~rafael/web/copa/biojs/src/test/data/unknownsegment.xml");

Parameters:
{string} hpaDasUrl: DAS XML with HPA summary information

Event Detail

onRequestError(actionPerformed)

instance.onRequestError(
   function( e ) {
      alert( e.message );
   }
);

Parameters:
{function} actionPerformed: A function which receives an Biojs.Event object as argument.

Event object data:
{Object} source: The component which did triggered the event.
{string} file: The name of the loaded file.
{string} result: A string with either value 'success' or 'failure'.
{string} message: Error message in case of result be 'failure'.

Classes

Class Biojs.HpaSummaryFeatures