Class Biojs.HpaSummaryFeature

Version 1.0.0.

Extends Biojs.

Defined in: Biojs.HpaSummaryFeature.js.

Class Summary
Constructor Attributes	Constructor Name and Description
	Biojs.HpaSummaryFeature(options) Component to represent one summary feature.

Field Summary
Field Attributes	Field Name and Description
<inner>	eventTypes Array containing the supported event names
<inner>	opt Default values for the options

Method Summary
Method Attributes	Method Name and Description
	constructor(options)

Methods borrowed from class Biojs:: addListener, extend, getId, listen, raiseEvent, setEventHandlers, setOptions

Event Summary
Event Attributes	Event Name and Description
	onFeatureSelected(actionPerformed)

Class Detail

Biojs.HpaSummaryFeature(options)

Component to represent one summary feature. Originally design to display protein expression information from the Human Protein Atlas (HPA)
Author: Rafael C Jimenez.

var instance = new Biojs.HpaSummaryFeature({
	  target: 'YourOwnDivId',
	  title: 'HPA001012 Normal Tissue immunohistochemistry summary',
	  imageUrl: 'http://www.proteinatlas.org/images/1012/ihc_selected_medium.jpg',
	  imageTitle: 'Immunohistochemical staining of human lymph node shows strong cytoplasmic positivity in lymphoid cells outside reaction centra',
	  notes: ["Lymphoid tissues showed moderate to strong cytoplasmic positivity. Remaining normal cells were generally negative","Two (or more) antibodies yielding similar staining patterns which are consistent with available gene/protein characterization data","Expression summary: Selective cytoplasmic expression in lymphoid cells","Reliable score: High","Validation score: Supportive","67 normal tissues by immunohistochemistry"],
	  linkUrl:'http://www.proteinatlas.org/ENSG00000089820/normal',
	  linkTitle:'HPA original source',
	  width: '585px',
	  imageWidth: '150px'
});

Parameters:
{Object} options: An object with the options for this component.

Options detailed:
{string} target: Identifier of the DIV tag where the component should be displayed.
{string} title: Title of the summary
{string} imageUrl: URL of an image file with expression data
{string} imageTitle: Title or description of an image file with expression data
{string} notes: List of point including summary information for this feature
{string} linkUrl: List of points including summary information for this feature
{string} linkTitle: List of points including summary information for this feature
{string} width: [900px] List of points including summary information for this feature
{string} imageWidth: [200px] List of points including summary information for this feature

Requires:: jQuery Core 1.6.4; Biojs.HpaSummaryFeature.css

Field Detail

<inner> eventTypes

Array containing the supported event names

<inner> opt

Default values for the options

Method Detail

constructor(options)

Parameters:
options

Event Detail

onFeatureSelected(actionPerformed)

instance.onTextSelected(
   function( objEvent ) {
      alert(objEvent.textSelected);
   }
);

Parameters:
{function} actionPerformed: A function which receives an Biojs.Event object as argument.

Event object data:
{Object} source: The component which did triggered the event.
{string} type: The name of the event.
{int} textSelected: Selected text.

Classes

Class Biojs.HpaSummaryFeature