Class Biojs.GeneExpressionSummary

Version 1.0.0.

Extends Biojs.

Defined in: Biojs.GeneExpressionSummary.js.

Class Summary
Constructor Attributes	Constructor Name and Description
	Biojs.GeneExpressionSummary(options) Gene expression summary

Field Summary
Field Attributes	Field Name and Description
<inner>	eventTypes Array containing the supported event names
<inner>	opt Default values for the options

Method Summary
Method Attributes	Method Name and Description
	constructor(options)
	setIdentifier(identifier) Fetch the data by means of identifier.

Methods borrowed from class Biojs:: addListener, extend, getId, listen, raiseEvent, setEventHandlers, setOptions

Event Summary
Event Attributes	Event Name and Description
	onDbError(actionPerformed)
	onRequestError(actionPerformed)

Class Detail

Biojs.GeneExpressionSummary(options)

Gene expression summary
Author: John Gomez-Carvajal, Rafael Jimenez.

var instance = new Biojs.GeneExpressionSummary({
	  target: 'YourOwnDivId',
	  identifier: 'ENSG00000066279'
});

Options detailed:
{string} target: Identifier of the DIV tag where the component should be displayed.
{string} identifier: ENSEMBL gene identifier or UniProt Acc needed as input to fetch the Gene expression summary data
{string} [featuresUrl='http://www.ebi.ac.uk/gxa/das/s4/features']: Url of the REST service which provides the summary data.
{string} [legend=true]: Option to display the provenance legend.
{string} [proxyUrl='../biojs/dependencies/proxy/proxy.php']: This component needs to request data from a web service. To bypass the same origin policy (http://en.wikipedia.org/wiki/Same_origin_policy) this component needs a proxy. You could use your own proxy by modifying this value or one of the BioJS proxies: '../biojs/dependencies/proxy/proxy.php' or '../biojs/dependencies/proxy/proxy.jsp'

Field Detail

<inner> eventTypes

Array containing the supported event names

<inner> opt

Default values for the options

Method Detail

constructor(options)

setIdentifier(identifier)

Fetch the data by means of identifier.

instance.setIdentifier("ENSG00000100867");

instance.setIdentifier("Q61171");

instance.setIdentifier("ENSG000000000000");

instance.setIdentifier("P00000");

Event Detail

onDbError(actionPerformed)

instance.onDbError(
   function( e ) {
      alert( e.message );
   }
);

Parameters:
{function} actionPerformed: A function which receives an Biojs.Event object as argument.

onRequestError(actionPerformed)

instance.onRequestError(
   function( e ) {
      alert( e.message );
   }
);

Parameters:
{function} actionPerformed: A function which receives an Biojs.Event object as argument.

Classes