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Class Biojs.GeneExpressionSummary


Version 1.0.0.

Extends Biojs.

Defined in: Biojs.GeneExpressionSummary.js.

Class Summary
Constructor Attributes Constructor Name and Description
 
Gene expression summary
Field Summary
Field Attributes Field Name and Description
<inner>  
Array containing the supported event names
<inner>  
opt
Default values for the options
Method Summary
Method Attributes Method Name and Description
 
constructor(options)
 
setIdentifier(identifier)
Fetch the data by means of identifier.
Methods borrowed from class Biojs:
addListener, extend, getId, listen, raiseEvent, removeListener, setEventHandlers, setOptions
Event Summary
Event Attributes Event Name and Description
 
onDbError(actionPerformed)
 
onRequestError(actionPerformed)
Class Detail
Biojs.GeneExpressionSummary(options)
Gene expression summary
Author: John Gomez-Carvajal, Rafael Jimenez.
var instance = new Biojs.GeneExpressionSummary({
	  target: 'YourOwnDivId',
	  identifier: 'ENSG00000066279'
});
Parameters:
{Object} options
An object with the options for Sequence component.
Options detailed:
{string} target
Identifier of the DIV tag where the component should be displayed.
{string} identifier
ENSEMBL gene identifier or UniProt Acc needed as input to fetch the Gene expression summary data
{string} [featuresUrl='http://www-test.ebi.ac.uk/gxa/das/s4/features']
Url of the REST service which provides the summary data.
{string} [legend=true]
Option to display the provenance legend.
{string} [proxyUrl='../biojs/dependencies/proxy/proxy.php']
This component needs to request data from a web service. To bypass the same origin policy (http://en.wikipedia.org/wiki/Same_origin_policy) this component needs a proxy. You could use your own proxy by modifying this value or one of the BioJS proxies: '../biojs/dependencies/proxy/proxy.php' or '../biojs/dependencies/proxy/proxy.jsp'
Requires:
jQuery Core 1.6.4
GeneExpressionSummary.css
Field Detail
<inner> eventTypes
Array containing the supported event names

<inner> opt
Default values for the options
Method Detail
constructor(options)
Parameters:
options

setIdentifier(identifier)
Fetch the data by means of identifier.
instance.setIdentifier("ENSG00000100867");
instance.setIdentifier("Q61171");
instance.setIdentifier("ENSG000000000000");
instance.setIdentifier("P00000");
Parameters:
{string} identifier
The segment identifier.
Event Detail
onDbError(actionPerformed)
instance.onDbError(
   function( e ) {
      alert( e.message );
   }
);
Parameters:
{function} actionPerformed
A function which receives an Biojs.Event object as argument.
Event object data:
{Object} source
The component which did triggered the event.
{string} file
The name of the loaded file.
{string} result
A string with either value 'success' or 'failure'.
{string} message
Error message in case of result be 'failure'.

onRequestError(actionPerformed)
instance.onRequestError(
   function( e ) {
      alert( e.message );
   }
);
Parameters:
{function} actionPerformed
A function which receives an Biojs.Event object as argument.
Event object data:
{Object} source
The component which did triggered the event.
{string} file
The name of the loaded file.
{string} result
A string with either value 'success' or 'failure'.
{string} message
Error message in case of result be 'failure'.

Documentation generated by JsDoc Toolkit 2.3.2 on Thu Apr 17 2014 17:42:42 GMT+0100 (BST)