Class Biojs.DasProteinFeatureViewer

var myPainter = new Biojs.DasProteinFeatureViewer({
   target: "YourOwnDivId",
   segment: "a4_human"
});

Parameters:

{Object} options

An object with the options for DASProteinFeatureViewer component.

Options detailed:

{string} target

Identifier of the DIV tag where the component should be displayed.

{boolean} [showSlider=true]

Should the slider for zooming be displayed?

{boolean} [showPrintButton=true]

Should the button for printing/exporting to image be displayed?

{boolean} [showFeatureTooltipOnMouseOver=true]

Should the tooltip for features be displayed?

{boolean} [highlightFeatureOnMouseOver=true]

Should the features be highlighted when mouse over?

{boolean} [selectFeatureOnMouseClick=true]

Should the features remain highlighted, i.e. being selected, after a mouse click, and deselected after a second click or whenever other feature is selected?

{boolean} [dragSites=true]

Should the sites be draggable?

{string} segment

Protein identifier or protein accession

{string} [dasSources="http://www.ebi.ac.uk/das-srv/uniprot/das/uniprot"]

DAS protein sources used to retrieved the features, if another one is needed, just add something like ",URL"

{string} featureTypes

In case of more than one source, it is possible to specify only one of them to retrieve a particular feature type. For instance "feature.DOMAIN=http://www.ebi.ac.uk/das-srv/interpro/das/InterPro-matches-overview", for more types just add something like "&feature.XXX=URL" Feature type should be capitalized and can be any of these: DOMAIN, CA_BIND, DNA_BIND, NP_BIND, INTRAMEM, TOPO_DOM, TRANSMEM, ZN_FING, PEPTIDE, PROPEP, SIGNAL, TRANSIT, ACT_SITE, METAL, CARBOHYD, LIPID, MOD_RES, COILED, COMPBIAS, CONSERVED_MOTIF, REGION, REPEAT, CHAIN, INIT_MET, BINDING, SITE, NON_STD, DISULFID, CROSSLINK, VAR_SEQ, VARIANT, MUTAGEN, UNSURE, CONFLICT, NON_CONS, NON_TER, HELIX, TURN, STRAND

{string} featureNames

Feature names are displayed as part of the legend. In case you want to modify the text associated to a feature type, you can use this option. For instance name.DOMAIN=Family domains, for more names just add something like "&name.XXX=any text" Feature type should be capitalized and can be any of these: DOMAIN, CA_BIND, DNA_BIND, NP_BIND, INTRAMEM, TOPO_DOM, TRANSMEM, ZN_FING, PEPTIDE, PROPEP, SIGNAL, TRANSIT, ACT_SITE, METAL, CARBOHYD, LIPID, MOD_RES, COILED, COMPBIAS, CONSERVED_MOTIF, REGION, REPEAT, CHAIN, INIT_MET, BINDING, SITE, NON_STD, DISULFID, CROSSLINK, VAR_SEQ, VARIANT, MUTAGEN, UNSURE, CONFLICT, NON_CONS, NON_TER, HELIX, TURN, STRAND

{int} [imageWidth=700]

Image width

{string} [imageStyle="nonOverlapping"]

Image style, a value from {nonOverlapping, centered, rows}

{boolean} [hgrid=false]

Should horizontal lines be shown?

{boolean} [vgrid=false]

Should vertical lines be shown?

{boolean} [allFeatures=true]

Should all feature types be displayed? or only those defined by default? Default feature types: DOMAIN, CA_BIND, DNA_BIND, NP_BIND, INTRAMEM, TOPO_DOM, TRANSMEM, ZN_FING, PEPTIDE, PROPEP, SIGNAL, TRANSIT, ACT_SITE, METAL, CARBOHYD, LIPID, MOD_RES Other features that will be displayed if allFeatures is true: COILED, COMPBIAS, CONSERVED_MOTIF, REGION, REPEAT, CHAIN, INIT_MET, BINDING, SITE, NON_STD, DISULFID, CROSSLINK, VAR_SEQ, VARIANT, MUTAGEN, UNSURE, CONFLICT, NON_CONS, NON_TER, HELIX, TURN, STRAND

{boolean} [allRectangles=false]

Should all features, including those involving just one amino acid be displayed as rectangles? If not, some predefined features will be use for ACT_SITE, METAL, CARBOHYD, LIPID, MOD_RES

{boolean} [allSameSize=false]

If "centered" is the image style option, should all rectangles have the same size?

{string} [proxyUrl="../biojs/dependencies/proxy/proxy.php"]

Server side proxy server.