Wise2 - Intelligent algorithms for DNA searches

Advanced Query

The Wise2 form compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors.

Your Email	Results	Output for alignments
		Parameters	Pretty alignment
Output for gene predictions
Gene structure	ACeDB subsequence object	Translation	cDNA
GFF output	EMBL feature table format	EMBL FT format suitable for diana
Local/Global mode	Organism	Intronic bias

Splice site	Null (Random) Model	Algorithm

Sequence 1: paste a Protein Sequence in fasta format OR upload a file:

Seq. 1 Upload a file:

Sequence 2: paste a DNA Sequence in fasta format OR upload a file:

Seq. 2 Upload a file:

For questions and comments please email Ewan Birney.

If you plan to use these services during a course please contact us.