Wise2 - Intelligent algorithms for DNA searches

Basic Query

The Wise2 form compares a protein sequence to a genomic DNA sequence, allowing for introns and frameshifting errors.

The model parameters which have been chosen for you are as follows:

Human gene parameters
Local start/end in the protein
6:23 Algorithm

This is the simple Wise2 form, to change these parameters you need to use the advanced form.
Download Software

Your Email	Results	Output for alignments
		Parameters	Pretty alignment
Output for gene predictions
Gene structure	Translation	cDNA	EMBL feature table format

Sequence 1: paste a Protein Sequence in FASTA format OR upload a file:

Seq. 1 Upload a file:

Sequence 2: paste a DNA Sequence in FASTA format OR upload a file:

Seq. 2 Upload a file:

For questions and comments please email Ewan Birney.

If you plan to use these services during a course please contact us.