Thornton Group Software

The following software packages have been made publicly available by members of the Thornton Group.

Software	Description
ArchSchema	ArchSchema is a java program that generates dynamic plots of related Pfam domain architectures. Authors: Asif Tamuri and Roman Laskowski
LIGPLOT	LIGPLOT is a program which plots schematic diagrams of protein-ligand interactions. Authors: Andrew Wallace and Roman Laskowski.
PROCHECK	PROCHECK checks the stereochemical quality of protein structures. Authors: Roman Laskowski. Malcolm MacArthur, David Smith, David Jones, Gail Hutchinson, Louise Morris, David Moss and Janet Thornton.
PROCHECK-COMP	PROCOMP Compares residue-by-residue geometry of a set of closely-related protein structures. PROCOMP is part of PROCHECK (see above). Author: Roman Laskowski.
PROCHECK-NMR	PROCHECK-NMR is a suite of programs that have been derived from the PROCHECK programs to analyse ensembles of protein structures solved by NMR. Authors: Roman Laskowski and Malcolm MacArthur.
QUASIPROX	Quaternary Structure Inference of Proteins from their Crystals. Author: Hannes Posntingl.
SMSD	SMSD (small molecule subgraph detector) is a program to find similar molecules and reactions to a given one. Author: Syed Asad Rahman (asad@ebi.ac.uk).
SURFNET	Program to generate surfaces, and void regions between surfaces, from coordinate data supplied in a PDB file. Author: Roman Laskowski. N.B. This link is still hosted at UCL.

Contact

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