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GO:0044428 nuclear part

Term Information

ID GO:0044428
Name nuclear part
Ontology Cellular Component
Definition Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
Restrictions This term should not be used for direct annotation. See comment below for further information.
Comment Note that this term is in the subset of terms that should not be used for direct gene product annotation. Instead, select a child term or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
GONUTS GO:0044428 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
exact nuclear subcomponent
exact nucleus component

Taxon Constraints

The use of this term should conform to the following taxon constraints:
Taxon Rule Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GOTAX:0000057 GO:0005623 cell only_in_taxon 131567 cellular organisms
GOTAX:0000059 GO:0005634 nucleus only_in_taxon 2759 Eukaryota
More information on taxon constraints in GO is available here

Ancestor Chart

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0044428:
Relationship To GO:0044428 Child Term Child Term Name
Is a GO:0005641 nuclear envelope lumen
Is a GO:0000109 nucleotide-excision repair complex
Is a GO:0000152 nuclear ubiquitin ligase complex
Is a GO:0000176 nuclear exosome (RNase complex)
Is a GO:0000214 tRNA-intron endonuclease complex
Is a GO:0000228 nuclear chromosome
Is a GO:0000346 transcription export complex
Is a GO:0000347 THO complex
Is a GO:0000943 retrotransposon nucleocapsid
Is a GO:0005635 nuclear envelope
Is a GO:0005652 nuclear lamina
Is a GO:0005654 nucleoplasm
Is a GO:0005681 spliceosomal complex
Is a GO:0005697 telomerase holoenzyme complex
Is a GO:0005730 nucleolus
Is a GO:0070418 DNA-dependent protein kinase complex
Is a GO:0005880 nuclear microtubule
Is a GO:0008180 COP9 signalosome
Is a GO:0031510 SUMO activating enzyme complex
Is a GO:0005638 lamin filament
Is a GO:0070421 DNA ligase III-XRCC1 complex
Is a GO:0070390 transcription export complex 2
Is a GO:0071664 catenin-TCF7L2 complex
Is a GO:0070310 ATR-ATRIP complex
Is a GO:0005958 DNA-dependent protein kinase-DNA ligase 4 complex
Is a GO:1990345 MTREC complex
Is a GO:0033062 Rhp55-Rhp57 complex
Is a GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex
Is a GO:0033064 XRCC2-RAD51D complex
Is a GO:0033065 Rad51C-XRCC3 complex
Is a GO:0033066 Rad51B-Rad51C complex
Is a GO:0070313 RGS6-DNMT1-DMAP1 complex
Is a GO:0032807 DNA ligase IV complex
Is a GO:0032116 SMC loading complex
Is a GO:0033597 mitotic checkpoint complex
Is a GO:0055029 nuclear DNA-directed RNA polymerase complex
Is a GO:0016363 nuclear matrix
Is a GO:0019035 viral integration complex
Is a GO:0019036 viral transcriptional complex
Is a GO:0019907 cyclin-dependent protein kinase activating kinase holoenzyme complex
Is a GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex
Is a GO:0034064 Tor2-Mei2-Ste11 complex
Is a GO:0030532 small nuclear ribonucleoprotein complex
Is a GO:0030689 Noc complex
Is a GO:0030870 Mre11 complex
Is a GO:0030895 apolipoprotein B mRNA editing enzyme complex
Is a GO:0031380 nuclear RNA-directed RNA polymerase complex
Is a GO:0031499 TRAMP complex
Is a GO:0031519 PcG protein complex
Is a GO:0031533 mRNA cap methyltransferase complex
Is a GO:0031595 nuclear proteasome complex
Is a GO:0031598 nuclear proteasome regulatory particle
Is a GO:0031601 nuclear proteasome core complex
Is a GO:0031604 nuclear proteasome core complex, alpha-subunit complex
Is a GO:0031607 nuclear proteasome core complex, beta-subunit complex
Is a GO:0031610 nuclear proteasome regulatory particle, base subcomplex
Is a GO:0031613 nuclear proteasome regulatory particle, lid subcomplex
Is a GO:0031965 nuclear membrane
Is a GO:0031981 nuclear lumen
Is a GO:0070274 RES complex
Is a GO:0070876 SOSS complex
Is a GO:0070877 microprocessor complex
Is a GO:0035145 exon-exon junction complex
Is a GO:0042405 nuclear inclusion body
Is a GO:0043564 Ku70:Ku80 complex
Is a GO:0044451 nucleoplasm part
Is a GO:0044452 nucleolar part
Is a GO:0044453 nuclear membrane part
Is a GO:0044454 nuclear chromosome part
Is a GO:0034978 PDX1-PBX1b-MRG1 complex
Is a GO:0034980 FHL2-CREB complex
Is a GO:0034981 FHL3-CREB complex
Is a GO:0034992 microtubule organizing center attachment site
Is a GO:0044195 nucleoplasmic reticulum
Is a GO:0035843 endonuclear canal
Is a GO:0070516 CAK-ERCC2 complex
Is a GO:0034692 E.F.G complex
Is a GO:0002111 BRCA2-BRAF35 complex
Is a GO:0005643 nuclear pore
Is a GO:0031080 nuclear pore outer ring
Is a GO:0046536 dosage compensation complex
Is a GO:0046808 assemblon
Is a GO:0046818 dense nuclear body
Is a GO:0034993 SUN-KASH complex
Is a GO:0097356 perinucleolar compartment
Is a GO:0033203 DNA helicase A complex
Is a GO:0070552 BRISC complex
Is a GO:0070557 PCNA-p21 complex
Is a GO:0071687 horsetail nucleus leading edge
Is a GO:0070353 GATA1-TAL1-TCF3-Lmo2 complex
Is a GO:0070354 GATA2-TAL1-TCF3-Lmo2 complex
Is a GO:0033167 ARC complex
Is a GO:0032545 CURI complex
Is a GO:0071204 histone pre-mRNA 3'end processing complex
Is a GO:0034399 nuclear periphery
Is a GO:0034753 nuclear aryl hydrocarbon receptor complex
Is a GO:0070531 BRCA1-A complex
Is a GO:0070532 BRCA1-B complex
Is a GO:0070533 BRCA1-C complex
Is a GO:0070467 RC-1 DNA recombination complex
Is a GO:0032301 MutSalpha complex
Is a GO:0032302 MutSbeta complex
Is a GO:0032389 MutLalpha complex
Is a GO:0032390 MutLbeta complex
Is a GO:0070693 P-TEFb-cap methyltransferase complex
Is a GO:0070762 nuclear pore transmembrane ring
Is a GO:0070767 BRCA1-Rad51 complex
Is a GO:0044798 nuclear transcription factor complex
Is a GO:1990469 Rhino-Deadlock-Cutoff Complex
Is a GO:0044611 nuclear pore inner ring
Is a GO:0044612 nuclear pore linkers
Is a GO:0044613 nuclear pore central transport channel
Is a GO:0044614 nuclear pore cytoplasmic filaments
Is a GO:0044615 nuclear pore nuclear basket
Is a GO:1990453 nucleosome disassembly/reassembly complex
Is a GO:1990354 activated SUMO-E1 ligase complex
Is a GO:0005677 chromatin silencing complex
Is a GO:0035059 RCAF complex
Is a GO:0048189 Lid2 complex
Is a GO:0070603 SWI/SNF superfamily-type complex
Is a GO:1990333 mitotic checkpoint complex, CDC20-MAD2 subcomplex
Is a GO:0032806 carboxy-terminal domain protein kinase complex
Is a GO:0033620 Mei2 nuclear dot complex
Is a GO:1990251 Mmi1 nuclear focus complex
Is a GO:0000439 core TFIIH complex
Is a GO:0097165 nuclear stress granule
Is a GO:0000440 core TFIIH complex portion of NEF3 complex
Is a GO:0008024 positive transcription elongation factor complex b

Protein Annotation

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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0044428. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0044428 based on the entire annotation set Co-occurrence statistics for GO:0044428 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2014-08-07 Added SYNONYM nuclear subcomponent
2013-04-19 Added SLIM gocheck_do_not_annotate
2008-05-13 Added DEFINITION Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
2008-05-12 Deleted DEFINITION Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
2008-04-01 Updated RELATION is a GO:0044446 (intracellular organelle part)
2008-04-01 Updated RELATION part of GO:0005634 (nucleus)
2007-08-09 Added SYNONYM nucleus component
2007-08-09 Deleted SYNONYM nucleus component
2006-06-06 Added DEFINITION Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
2006-06-05 Added TERM nuclear part
2006-06-05 Added SYNONYM nucleus component

Term

Timestamp Action Category Detail
2006-06-05 Added TERM nuclear part

Definition/synonyms

Timestamp Action Category Detail
2014-08-07 Added SYNONYM nuclear subcomponent
2008-05-13 Added DEFINITION Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
2008-05-12 Deleted DEFINITION Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
2007-08-09 Added SYNONYM nucleus component
2007-08-09 Deleted SYNONYM nucleus component
2006-06-06 Added DEFINITION Any constituent part of the nucleus, a membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated.
2006-06-05 Added SYNONYM nucleus component

Relationships

Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0044446 (intracellular organelle part)
2008-04-01 Updated RELATION part of GO:0005634 (nucleus)

Other

Timestamp Action Category Detail
2013-04-19 Added SLIM gocheck_do_not_annotate
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