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GO:0043565 sequence-specific DNA binding

Term Information

ID GO:0043565
Name sequence-specific DNA binding
Ontology Molecular Function
Definition Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GONUTS GO:0043565 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
exact sequence specific DNA binding

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:
Annotation Guidelines
Binding term considerationsLink
Considerations when annotating from ChiP assay resultsLink

Cross-references

Database ID
InterPro IPR000232
InterPro IPR000418
InterPro IPR000485
InterPro IPR000679
InterPro IPR001275
InterPro IPR001387
InterPro IPR001628
InterPro IPR001766
InterPro IPR002197
InterPro IPR002848
InterPro IPR003106
InterPro IPR003118
InterPro IPR003657
InterPro IPR003956
InterPro IPR003958
InterPro IPR004827
InterPro IPR009390
InterPro IPR010921
InterPro IPR013159
InterPro IPR016068
InterPro IPR016069
InterPro IPR016325
InterPro IPR017919
InterPro IPR017970
InterPro IPR018060
InterPro IPR018062
InterPro IPR018122
InterPro IPR019888
InterPro IPR024627
InterPro IPR025422
InterPro IPR027543
InterPro IPR027759
InterPro IPR029547
InterPro IPR029802
InterPro IPR029810
InterPro IPR029825
InterPro IPR029859
InterPro IPR030019

Ancestor Chart

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0043565:
Relationship To GO:0043565 Child Term Child Term Name
Is a GO:0000182 rDNA binding
Is a GO:0003680 AT DNA binding
Is a GO:0003688 DNA replication origin binding
Is a GO:0003693 P-element binding
Is a GO:0003696 satellite DNA binding
Is a GO:0008327 methyl-CpG binding
Is a GO:0019237 centromeric DNA binding
Is a GO:0031634 replication fork barrier binding
Is a GO:0042162 telomeric DNA binding
Is a GO:0045322 unmethylated CpG binding
Is a GO:0071443 tDNA binding
Is a GO:0000976 transcription regulatory region sequence-specific DNA binding
Is a GO:0032422 purine-rich negative regulatory element binding
Is a GO:0044374 sequence-specific DNA binding, bending

Protein Annotation

Displaying annotations FIRST to LAST of TOTAL Page size: Additional filters: Bookmarkable link
Database
Gene Product ID
Symbol
Qualifier
GO Identifier
GO Term Name
Aspect
Original GO ID
Original GO Term Name
Evidence
Reference
With
Taxon
Date
Assigned By
Product Form ID
Name
Synonym
Type
Taxon Name
Sequence

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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0043565. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0043565 based on the entire annotation set Co-occurrence statistics for GO:0043565 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2009-07-03 Deleted DEFINITION Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2008-05-13 Added DEFINITION Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2008-05-12 Deleted DEFINITION Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2008-04-01 Updated RELATION is a GO:0003677 (DNA binding)
2007-08-09 Added SYNONYM sequence specific DNA binding
2007-08-09 Deleted SYNONYM sequence specific DNA binding
2005-12-10 Added SYNONYM sequence specific DNA binding
2005-12-10 Added DEFINITION Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2005-12-10 Added TERM sequence-specific DNA binding

Term

Timestamp Action Category Detail
2005-12-10 Added TERM sequence-specific DNA binding

Definition/synonyms

Timestamp Action Category Detail
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2009-07-03 Deleted DEFINITION Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2008-05-13 Added DEFINITION Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2008-05-12 Deleted DEFINITION Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
2007-08-09 Added SYNONYM sequence specific DNA binding
2007-08-09 Deleted SYNONYM sequence specific DNA binding
2005-12-10 Added SYNONYM sequence specific DNA binding
2005-12-10 Added DEFINITION Interacting selectively with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.

Relationships

Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0003677 (DNA binding)
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