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EBIDatabasesQuickGO

GO:0042134 rRNA primary transcript binding

Interacting selectively and non-covalently with an unprocessed ribosomal RNA transcript.

Term Information

ID GO:0042134
Name rRNA primary transcript binding
Ontology Molecular Function
Definition Interacting selectively and non-covalently with an unprocessed ribosomal RNA transcript.
Comment
Secondary IDs

GONUTS Wiki Page

Web service: term information

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GTerm?id=termID&format=format

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Ancestor Chart

Visual display of a section of the GO directed acyclic graph (DAG) for a single GO term. Terms in the GO are linked to parent (more general) terms and often to child (more specific) terms by one or more 'relationships'

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Chart

Ancestor Table

Alternative display of a section of the GO, providing a concise view of the relationships connecting GO terms

All GO terms displayed in this chart can be right-clicked to display term definitions and child (descendent) terms.

GO:0003674 molecular_function
GO:0005488 binding
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0019843 rRNA binding
GO:0042134 rRNA primary transcript binding

Relationship key

Code Relationship
part of
is a
regulates
+ve regulates
-ve regulates

Child Terms

All direct descendants (child terms) available for this GO term:
Term has no children

Protein Annotation

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QuickGO maps between different identifier types by using a combination of mapping files provided by the databases, and using identifier cross-references supplied by UniProtKB.
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9606 Human
10090 Mouse
40674 Mammalia
3398 Magnoliophyta (flowering plants)
2759 Eukaryota
1117 Cyanobacteria
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Qualifier:
(none)
colocalizes_with colocalizes_with
contributes_to contributes_to
NOT NOT
NOT|colocalizes_with NOT|colocalizes_with
NOT|contributes_to NOT|contributes_to
GO Terms:
GO:0042134
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Annotated from any of these references:
GO_REF:* GO Reference
GO_REF:0000002 InterPro2GO
GO_REF:0000003 EC2GO
GO_REF:0000004 Swiss-Prot Keywords2GO
GO_REF:0000019 Compara
GO_REF:0000020 HAMAP2GO
GO_REF:0000023 Subcellular Location2GO
References (with or without database prefix):
With evidence:
IMP,IGI,IPI,IDA,IEP,EXP Manual Experimental
IMP,IGI,IPI,IDA,IEP,EXP,ISS,TAS,NAS,ND,IC,RCA Manual All
IMPinferred from mutant phenotype
IGIinferred from genetic interaction
IPIinferred from physical interaction
IGCInferred from Genomic Context
ISSinferred from sequence or structural similarity
IDAinferred from direct assay
IEPinferred from expression pattern
IEAinferred from electronic annotation
TAStraceable author statement
NASnon-traceable author statement
NDno data
ICinferred by curator
RCAreviewed computational annotation
ISAinferred from sequence alignment
EXPinferred from experiment
Annotated with reference:
EC:* Enzyme Code
HAMAP:* High-quality Automated and Manual Annotation of microbial Proteomes
InterPro:* InterPro
SP_KW:* UniProt Knowledgebase keywords
SP_SL:* UniProtKB Subcellular Location identifiers
UniProtKB:* UniProtKB
Annotated with (with or without database prefix):
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Format: . Current columns, Tab Separated Values: .

Web service: annotation

Use this URI template to access this data as a service:

GAnnotation?format=tsv&limit=max-number-of-rows{&gz}{&q=advanced query}{&field=value{,value}}

Full details can be found on the QuickGO Web Services page.

Co-occurring Terms

Co-occurrence statistics

This display shows those GO terms which have been annotated to the same proteins as this term.
Terms may have been co-annotated either by electronic (IEA) or manual annotation methods. Users can decide which evidence code type should be used in the calculation of the co-occurence statistics.
Click on the 'Update' button to run the co-occurence calculation
IMP IGI IPI IGC ISS IDA IEP IEA TAS NAS ND IC RCA ISA EXP Statistics may take up to 1 minute to calculate
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Hostnametomcat-7.ebi.ac.uk
Uptime11:21 5/2/2010
Data version2010-02-10-03-49-32
Terminal
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