spacer

GO:0034401 chromatin organization involved in regulation of transcription

Term Information

ID GO:0034401
Name chromatin organization involved in regulation of transcription
Ontology Biological Process
Definition Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin that modulates the rate, frequency or extent of DNA-dependent transcription.
Restrictions This term should not be used for direct manual annotation. This term may be used for mapping to external vocabularies in order to create electronic annotations.
GONUTS GO:0034401 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
exact regulation of transcription by chromatin organisation
exact regulation of transcription by chromatin organization
exact establishment or maintenance of chromatin architecture during transcription

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:
Annotation Guidelines
Annotating to transcription processesLink

Ancestor Chart

This chart is interactive; you can click on the term boxes and legend for more information.
Display options
Display
Key
GO IDs
Term box width
Term box height
Slim colours
Show children
Image size limit (in megapixels)
Note that setting the limit too high may result in images being generated slowly; it may even cause the browser to crash. The maximum limit is 20 megapixels.

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0034401:
Relationship To GO:0034401 Child Term Child Term Name
Is a GO:0097549 chromatin organization involved in negative regulation of transcription

Protein Annotation

Displaying annotations FIRST to LAST of TOTAL Page size: Additional filters: Bookmarkable link
Database
Gene Product ID
Symbol
Qualifier
GO Identifier
GO Term Name
Aspect
Original GO ID
Original GO Term Name
Evidence
Reference
With
Taxon
Date
Assigned By
Product Form ID
Name
Synonym
Type
Taxon Name
Sequence

Export

Display options

ID Mapping

QuickGO maps between different identifier types by using a combination of mapping files provided by the databases, and using identifier cross-references supplied by UniProtKB.

If more than one identifier type needs to be used to map all required sequences, drag the selected databases to change the order in which identifiers are found.

Filter

Select

Grouped by
Annotation count
Protein count
Both

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0034401. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0034401 based on the entire annotation set Co-occurrence statistics for GO:0034401 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2015-04-24 Added RELATION part of GO:0006355 (regulation of transcription, DNA-templated)
2015-02-14 Deleted RELATION is a GO:0006355 (regulation of transcription, DNA-templated)
2014-11-29 Updated TERM chromatin organization involved in regulation of transcription
2014-11-29 Added SYNONYM regulation of transcription by chromatin organization
2014-11-29 Added SLIM gocheck_do_not_manually_annotate
2013-02-02 Deleted RELATION part of GO:0006351 (transcription, DNA-templated)
2012-10-29 Added RELATION part of GO:0006351 (transcription, DNA-templated)
2012-04-14 Added SYNONYM regulation of transcription by chromatin organisation
2011-05-06 Deleted RELATION is a GO:0043620 (regulation of DNA-templated transcription in response to stress)
2011-05-06 Added RELATION is a GO:0006355 (regulation of transcription, DNA-templated)
2010-03-19 Added RELATION is a GO:0043620 (regulation of DNA-templated transcription in response to stress)
2010-03-19 Added DEFINITION Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin that modulates the rate, frequency or extent of DNA-dependent transcription.
2010-03-19 Deleted DEFINITION Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin during transcription.
2010-03-19 Updated TERM regulation of transcription by chromatin organization
2009-08-03 Updated TERM chromatin organization during transcription
2009-08-03 Added SYNONYM establishment or maintenance of chromatin architecture during transcription
2008-10-02 Deleted DEFINITION Any cellular process that results in the specification, formation or maintenance of of the physical structure of eukaryotic chromatin during transcription.
2008-10-02 Added DEFINITION Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-09-07 Updated TERM establishment or maintenance of chromatin architecture during transcription
2008-09-07 Added DEFINITION Any cellular process that results in the specification, formation or maintenance of of the physical structure of eukaryotic chromatin during transcription.
2008-09-07 Deleted DEFINITION The specification, formation and maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-05-13 Added DEFINITION The specification, formation and maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-05-12 Deleted DEFINITION The specification, formation and maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-04-27 Added DEFINITION The specification, formation and maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-04-14 Added TERM establishment and/or maintenance of chromatin architecture during transcription
2008-04-14 Added RELATION is a GO:0006325 (chromatin organization)

Term

Timestamp Action Category Detail
2014-11-29 Updated TERM chromatin organization involved in regulation of transcription
2010-03-19 Updated TERM regulation of transcription by chromatin organization
2009-08-03 Updated TERM chromatin organization during transcription
2008-09-07 Updated TERM establishment or maintenance of chromatin architecture during transcription
2008-04-14 Added TERM establishment and/or maintenance of chromatin architecture during transcription

Definition/synonyms

Timestamp Action Category Detail
2014-11-29 Added SYNONYM regulation of transcription by chromatin organization
2012-04-14 Added SYNONYM regulation of transcription by chromatin organisation
2010-03-19 Added DEFINITION Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin that modulates the rate, frequency or extent of DNA-dependent transcription.
2010-03-19 Deleted DEFINITION Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin during transcription.
2009-08-03 Added SYNONYM establishment or maintenance of chromatin architecture during transcription
2008-10-02 Deleted DEFINITION Any cellular process that results in the specification, formation or maintenance of of the physical structure of eukaryotic chromatin during transcription.
2008-10-02 Added DEFINITION Any cellular process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-09-07 Added DEFINITION Any cellular process that results in the specification, formation or maintenance of of the physical structure of eukaryotic chromatin during transcription.
2008-09-07 Deleted DEFINITION The specification, formation and maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-05-13 Added DEFINITION The specification, formation and maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-05-12 Deleted DEFINITION The specification, formation and maintenance of the physical structure of eukaryotic chromatin during transcription.
2008-04-27 Added DEFINITION The specification, formation and maintenance of the physical structure of eukaryotic chromatin during transcription.

Relationships

Timestamp Action Category Detail
2015-04-24 Added RELATION part of GO:0006355 (regulation of transcription, DNA-templated)
2015-02-14 Deleted RELATION is a GO:0006355 (regulation of transcription, DNA-templated)
2013-02-02 Deleted RELATION part of GO:0006351 (transcription, DNA-templated)
2012-10-29 Added RELATION part of GO:0006351 (transcription, DNA-templated)
2011-05-06 Deleted RELATION is a GO:0043620 (regulation of DNA-templated transcription in response to stress)
2011-05-06 Added RELATION is a GO:0006355 (regulation of transcription, DNA-templated)
2010-03-19 Added RELATION is a GO:0043620 (regulation of DNA-templated transcription in response to stress)
2008-04-14 Added RELATION is a GO:0006325 (chromatin organization)

Other

Timestamp Action Category Detail
2014-11-29 Added SLIM gocheck_do_not_manually_annotate
spacer
Please send comments, suggestions or bug reports to goa@ebi.ac.uk. Click here for details of how to cite UniProt-GOA and QuickGO.
17ms