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GO:0010843 promoter binding

This term is obsolete.
This term was made obsolete because the word "promoter" is used ambiguously in the literature. It sometimes is used to refer specifically to the "core promoter" region recognized by the basal transcription machinery, and other times is used to refer to a larger regulatory region composed of the core promoter and also the regulatory region adjacent (proximal) to the core promoter. The core promoter proximal region is typically recognized by "regulatory transcription factors", such as Gal4 in S. cerevisiae.

Term Information

ID GO:0010843
Name promoter binding
Ontology Molecular Function
Definition OBSOLETE. Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
Comment This term was made obsolete because the word "promoter" is used ambiguously in the literature. It sometimes is used to refer specifically to the "core promoter" region recognized by the basal transcription machinery, and other times is used to refer to a larger regulatory region composed of the core promoter and also the regulatory region adjacent (proximal) to the core promoter. The core promoter proximal region is typically recognized by "regulatory transcription factors", such as Gal4 in S. cerevisiae.
GONUTS GO:0010843 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
exact DNA binding, transcription promoter

Replaced by

This term is obsolete - try one of these terms:
Advice GO Identifier Ontology GO Term Name
Consider GO:0001047 Molecular Function core promoter binding
Consider GO:0044212 Molecular Function transcription regulatory region DNA binding

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0010843:
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Protein Annotation

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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0010843. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0010843 based on the entire annotation set Co-occurrence statistics for GO:0010843 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2011-10-30 Added OBSOLETION consider GO:0001047 (core promoter binding)
2011-05-13 Deleted DEFINITION Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2011-05-13 Added DEFINITION OBSOLETE. Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2011-05-13 Updated TERM promoter binding
2011-05-13 Added OBSOLETION consider GO:0044212 (transcription regulatory region DNA binding)
2011-05-13 Deleted RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2011-05-13 Deleted RELATION is a GO:0043565 (sequence-specific DNA binding)
2009-11-15 Added DEFINITION Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-11-15 Deleted DEFINITION Interacting selectively and non-covalently within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-11-06 Added RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2009-07-03 Added DEFINITION Interacting selectively and non-covalently within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-07-03 Deleted DEFINITION Interacting selectively within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-01-12 Added TERM promoter binding
2009-01-12 Added DEFINITION Interacting selectively within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-01-12 Added SYNONYM DNA binding, transcription promoter
2009-01-12 Added RELATION is a GO:0043565 (sequence-specific DNA binding)

Term

Timestamp Action Category Detail
2011-05-13 Updated TERM promoter binding
2009-01-12 Added TERM promoter binding

Obsoletions

Timestamp Action Category Detail
2011-10-30 Added OBSOLETION consider GO:0001047 (core promoter binding)
2011-05-13 Added OBSOLETION consider GO:0044212 (transcription regulatory region DNA binding)

Definition/synonyms

Timestamp Action Category Detail
2011-05-13 Deleted DEFINITION Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2011-05-13 Added DEFINITION OBSOLETE. Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-11-15 Added DEFINITION Interacting selectively and non-covalently with the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-11-15 Deleted DEFINITION Interacting selectively and non-covalently within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-07-03 Added DEFINITION Interacting selectively and non-covalently within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-07-03 Deleted DEFINITION Interacting selectively within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-01-12 Added DEFINITION Interacting selectively within the regulatory region composed of the transcription start site and binding sites for transcription factor complexes of the basal transcription machinery.
2009-01-12 Added SYNONYM DNA binding, transcription promoter

Relationships

Timestamp Action Category Detail
2011-05-13 Deleted RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2011-05-13 Deleted RELATION is a GO:0043565 (sequence-specific DNA binding)
2009-11-06 Added RELATION is a GO:0044212 (transcription regulatory region DNA binding)
2009-01-12 Added RELATION is a GO:0043565 (sequence-specific DNA binding)
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