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GO:0006299 obsolete short patch mismatch repair system

This term is obsolete.
This term was made obsolete because 'short patch' is a relative statement, often used ambiguously, and does not necessarily represent a process; the processes it can stand for are base excision repair, nucleotide excision repair, transcription-coupled nucleotide excision repair, and mismatch repair.

Term Information

ID GO:0006299
Name obsolete short patch mismatch repair system
Ontology Biological Process
Definition OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.
PMID:10660619 PMID:10878254
Comment This term was made obsolete because 'short patch' is a relative statement, often used ambiguously, and does not necessarily represent a process; the processes it can stand for are base excision repair, nucleotide excision repair, transcription-coupled nucleotide excision repair, and mismatch repair.
GONUTS GO:0006299 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
exact short patch mismatch repair system

Replaced by

This term is obsolete - try one of these terms:
Advice GO Identifier Ontology GO Term Name
Consider GO:0006284 Biological Process base-excision repair
Consider GO:0006289 Biological Process nucleotide-excision repair

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0006299:
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Protein Annotation

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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0006299. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0006299 based on the entire annotation set Co-occurrence statistics for GO:0006299 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2015-06-18 Updated TERM obsolete short patch mismatch repair system
2015-06-18 Added SYNONYM short patch mismatch repair system
2010-06-08 Deleted RELATION is a GO:0008371 (obsolete biological process)
2010-06-08 Updated TERM short patch mismatch repair system
2008-06-03 Added OBSOLETION consider GO:0006284 (base-excision repair)
2008-06-03 Added OBSOLETION consider GO:0006289 (nucleotide-excision repair)
2008-05-13 Added DEFINITION OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.
2008-05-12 Deleted DEFINITION OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.
2008-04-01 Updated RELATION is a GO:0008371 (obsolete biological process)
2006-12-12 Updated DEFINITION OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.
2002-11-27 Added DEFINITION The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.
2002-02-06 Updated TERM short patch mismatch repair system
2001-04-03 Updated TERM short patch mismatch repair system
2001-03-30 Added TERM short patch mismatch repair system

Term

Timestamp Action Category Detail
2015-06-18 Updated TERM obsolete short patch mismatch repair system
2010-06-08 Updated TERM short patch mismatch repair system
2002-02-06 Updated TERM short patch mismatch repair system
2001-04-03 Updated TERM short patch mismatch repair system
2001-03-30 Added TERM short patch mismatch repair system

Obsoletions

Timestamp Action Category Detail
2008-06-03 Added OBSOLETION consider GO:0006284 (base-excision repair)
2008-06-03 Added OBSOLETION consider GO:0006289 (nucleotide-excision repair)

Definition/synonyms

Timestamp Action Category Detail
2015-06-18 Added SYNONYM short patch mismatch repair system
2008-05-13 Added DEFINITION OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.
2008-05-12 Deleted DEFINITION OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.
2006-12-12 Updated DEFINITION OBSOLETE. The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.
2002-11-27 Added DEFINITION The repair of mismatched DNA where the gap to be repaired is only one nucleotide. DNA polymerase is the preferred polymerase in short patch repair, performing gap filling DNA synthesis and removal of the 5'-deoxyribose phosphate of the abasic site.

Relationships

Timestamp Action Category Detail
2010-06-08 Deleted RELATION is a GO:0008371 (obsolete biological process)
2008-04-01 Updated RELATION is a GO:0008371 (obsolete biological process)
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