spacer

GO:0006284 base-excision repair

Term Information

ID GO:0006284
Name base-excision repair
Ontology Biological Process
Definition In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GONUTS GO:0006284 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
exact BER

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:
Annotation Guidelines
Guidance for interpreting DNA repair investigationsLink

Cross-references

Database ID
InterPro IPR002043
InterPro IPR003180
InterPro IPR003265
InterPro IPR004577
InterPro IPR004597
InterPro IPR005019
InterPro IPR005759
InterPro IPR005760
InterPro IPR012319
InterPro IPR016544
InterPro IPR023713
Wikipedia Base_excision_repair

Replaces

This term can be used instead of these obsolete terms:
GO Identifier GO Term Name Reason
GO:0006299 short patch mismatch repair system CONSIDER GO:0006284

Ancestor Chart

This chart is interactive; you can click on the term boxes and legend for more information.
Display options
Display
Key
GO IDs
Term box width
Term box height
Slim colours
Show children
Image size limit (in megapixels)
Note that setting the limit too high may result in images being generated slowly; it may even cause the browser to crash. The maximum limit is 20 megapixels.

Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0006284:
Relationship To GO:0006284 Child Term Child Term Name
Part of GO:0006285 base-excision repair, AP site formation
Part of GO:0006286 base-excision repair, base-free sugar-phosphate removal
Part of GO:0006287 base-excision repair, gap-filling
Part of GO:0006288 base-excision repair, DNA ligation

Protein Annotation

Displaying annotations FIRST to LAST of TOTAL Page size: Additional filters: Bookmarkable link
Database
Gene Product ID
Symbol
Qualifier
GO Identifier
GO Term Name
Aspect
Original GO ID
Original GO Term Name
Evidence
Reference
With
Taxon
Date
Assigned By
Product Form ID
Name
Synonym
Type
Taxon Name
Sequence

Export

Display options

ID Mapping

QuickGO maps between different identifier types by using a combination of mapping files provided by the databases, and using identifier cross-references supplied by UniProtKB.

If more than one identifier type needs to be used to map all required sequences, drag the selected databases to change the order in which identifiers are found.

Filter

Select

Grouped by
Annotation count
Protein count
Both

Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0006284. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0006284 based on the entire annotation set Co-occurrence statistics for GO:0006284 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2009-03-02 Added XREF Wikipedia:Base_excision_repair
2008-05-13 Added DEFINITION In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
2008-05-12 Deleted DEFINITION In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
2008-04-01 Updated RELATION is a GO:0006281 (DNA repair)
2007-08-09 Added SYNONYM BER
2007-08-09 Deleted SYNONYM BER
2005-03-26 Added SYNONYM BER
2002-11-27 Added DEFINITION In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
2002-02-06 Updated TERM base-excision repair
2001-04-03 Updated TERM base-excision repair
2001-03-30 Added TERM base-excision repair

Term

Timestamp Action Category Detail
2002-02-06 Updated TERM base-excision repair
2001-04-03 Updated TERM base-excision repair
2001-03-30 Added TERM base-excision repair

Definition/synonyms

Timestamp Action Category Detail
2008-05-13 Added DEFINITION In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
2008-05-12 Deleted DEFINITION In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
2007-08-09 Added SYNONYM BER
2007-08-09 Deleted SYNONYM BER
2005-03-26 Added SYNONYM BER
2002-11-27 Added DEFINITION In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.

Relationships

Timestamp Action Category Detail
2008-04-01 Updated RELATION is a GO:0006281 (DNA repair)

Cross-references

Timestamp Action Category Detail
2009-03-02 Added XREF Wikipedia:Base_excision_repair
spacer
Please send comments, suggestions or bug reports to goa@ebi.ac.uk. Click here for details of how to cite UniProt-GOA and QuickGO.
12ms