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EBIDatabasesQuickGO

GO:0005575 cellular_component

The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

Term Information

ID GO:0005575
Name cellular_component
Ontology Cellular Component
Definition The part of a cell or its extracellular environment in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.
Comment Note that, in addition to forming the root of the cellular component ontology, this term is recommended for use for the annotation of gene products whose cellular component is unknown. Note that when this term is used for annotation, it indicates that no information was available about the cellular component of the gene product annotated as of the date the annotation was made; the evidence code ND, no data, is used to indicate this.
Secondary IDs GO:0008372

GONUTS Wiki Page

GO Slims

This term is present in the following GO Consortium-maintained GO slims:
GO slim nameCount of all terms
goslim_candida92
goslim_generic127
goslim_goa62
goslim_pir467
goslim_plant102
goslim_yeast94

Synonyms

Type Synonym
narrow cellular component unknown
exact cellular component

Cross-references associated with this term:

Database ID
NIF_Subcellular sao1337158144

Web service: term information

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GTerm?id=termID&format=format

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Ancestor Chart

Visual display of a section of the GO directed acyclic graph (DAG) for a single GO term. Terms in the GO are linked to parent (more general) terms and often to child (more specific) terms by one or more 'relationships'

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Chart

Ancestor Table

Alternative display of a section of the GO, providing a concise view of the relationships connecting GO terms

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GO:0005575 cellular_component

Relationship key

Code Relationship
part of
is a
has part
regulates
+ve regulates
-ve regulates

Child Terms

All direct descendants (child terms) available for this GO term:
Is a GO:0045202 synapse
Is a GO:0019012 virion
Is a GO:0005623 cell
Is a GO:0031974 membrane-enclosed lumen
Is a GO:0005576 extracellular region
Is a GO:0043226 organelle
Is a GO:0055044 symplast
Is a GO:0032991 macromolecular complex
Is a GO:0044421 extracellular region part
Is a GO:0044422 organelle part
Is a GO:0044423 virion part
Is a GO:0044456 synapse part
Is a GO:0044464 cell part

Relationship key

CodeRelationship
Ppart of
Iis a

Protein Annotation

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9606 Human
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Qualifier:
contributes_to An individual protein that is part of a complex can be annotated to terms that describe the action of the complex. This qualifier allows us to distinguish individual subunit from complex functions e.g. This protein contributes_to 'ribosome binding' when part of a complex but does not perform this function on its own.
NOT|colocalizes_with NOT|colocalizes_with
NOT|contributes_to NOT|contributes_to
colocalizes_with Proteins that are transiently or peripherally associated with an organelle or complex may be annotated to the relevant cellular component term, using the 'colocalizes_with' qualifier.
NOT Used to make an explicit note that the protein is not associated with the GO term e.g. This protein does NOT have 'kinase activity' as expected, disrupted/missing ATP binding domain.
(none)
GO Terms:
GO:0005575 cellular_component
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Annotated from any of these references:
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GO_REF:0000020 HAMAP2GO
GO_REF:0000023 Subcellular Location2GO
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IMP,IGI,IPI,IDA,IEP,EXP Manual Experimental
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IGIinferred from genetic interaction
IPIinferred from physical interaction
IGCInferred from Genomic Context
ISSinferred from sequence or structural similarity
IDAinferred from direct assay
IEPinferred from expression pattern
IEAinferred from electronic annotation
TAStraceable author statement
NASnon-traceable author statement
NDno data
ICinferred by curator
RCAreviewed computational annotation
ISAinferred from sequence alignment
EXPinferred from experiment
Annotated with reference:
EC:* Enzyme Code
EMBL:* EMBL accession
HAMAP:* High-quality Automated and Manual Annotation of microbial Proteomes
InterPro:* InterPro
IPI:* International Protein Index
SP_KW:* UniProt Knowledgebase keywords
SP_SL:* UniProtKB Subcellular Location identifiers
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Web service: annotation

Use this URI template to access this data as a service:

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Co-occurring Terms

Co-occurrence statistics

This display shows those GO terms which have been annotated to the same proteins as this term.
Terms may have been co-annotated either by electronic (IEA) or manual annotation methods. Users can decide which evidence code type should be used in the calculation of the co-occurence statistics.
Click on the 'Update' button to run the co-occurence calculation
IMP IGI IPI IGC ISS IDA IEP IEA TAS NAS ND IC RCA ISA EXP Statistics may take up to 1 minute to calculate
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Hostnametomcat-10.ebi.ac.uk
Uptime12:17 31/8/2010
Data version2010-09-08-02-47-47
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