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GO:0001871 pattern binding

Term Information

ID GO:0001871
Name pattern binding
Ontology Molecular Function
Definition Interacting selectively and non-covalently with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
PMID:12072369 PMID:12225919 PMID:12507420 PMID:12925128 PMID:14523544
Comment Note that this term and its child terms are intended for annotation of gene products which function to recognize (bind) the repeating structural units such as polysaccharides or peptidoglycans commonly found in microbial cell walls and virions. If such binding is coupled to signal transduction, use 'pattern recognition receptor activity ; GO:0008329' instead.
GONUTS GO:0001871 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
broad pattern recognition activity

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:
Annotation Guidelines
Binding term considerationsLink

GO Slims

This term is present in the following GO Consortium-maintained GO slims:
GO slim nameCount of all terms
goslim_pir462

Ancestor Chart

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0001871:
Relationship To GO:0001871 Child Term Child Term Name
Is a GO:0030247 polysaccharide binding
Is a GO:0001876 lipoarabinomannan binding

Protein Annotation

Displaying annotations FIRST to LAST of TOTAL Page size: Additional filters: Bookmarkable link
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Gene Product ID
Symbol
Qualifier
GO Identifier
GO Term Name
Aspect
Original GO ID
Original GO Term Name
Evidence
Reference
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Taxon
Date
Assigned By
Product Form ID
Name
Synonym
Type
Taxon Name
Sequence

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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0001871. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0001871 based on the entire annotation set Co-occurrence statistics for GO:0001871 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2013-05-31 Added RELATION has part GO:0038187 (pattern recognition receptor activity)
2013-05-31 Deleted RELATION has part GO:0008329 (signaling pattern recognition receptor activity)
2013-04-18 Updated SLIM goslim_pir
2011-10-28 Added RELATION has part GO:0008329 (signaling pattern recognition receptor activity)
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
2009-07-03 Deleted DEFINITION Interacting selectively with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
2008-06-09 Added SLIM goslim_pir
2008-05-13 Added DEFINITION Interacting selectively with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
2008-05-12 Deleted DEFINITION Interacting selectively with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
2008-04-01 Updated RELATION is a GO:0005488 (binding)
2007-08-09 Added SYNONYM pattern recognition activity
2007-08-09 Deleted SYNONYM pattern recognition activity
2004-10-29 Added SYNONYM pattern recognition activity
2004-10-29 Deleted SYNONYM pattern recognition activity
2004-05-30 Added TERM pattern binding
2004-05-30 Added SYNONYM pattern recognition activity
2004-05-30 Added DEFINITION Interacting selectively with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.

Term

Timestamp Action Category Detail
2004-05-30 Added TERM pattern binding

Definition/synonyms

Timestamp Action Category Detail
2009-07-03 Added DEFINITION Interacting selectively and non-covalently with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
2009-07-03 Deleted DEFINITION Interacting selectively with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
2008-05-13 Added DEFINITION Interacting selectively with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
2008-05-12 Deleted DEFINITION Interacting selectively with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.
2007-08-09 Added SYNONYM pattern recognition activity
2007-08-09 Deleted SYNONYM pattern recognition activity
2004-10-29 Added SYNONYM pattern recognition activity
2004-10-29 Deleted SYNONYM pattern recognition activity
2004-05-30 Added SYNONYM pattern recognition activity
2004-05-30 Added DEFINITION Interacting selectively with a repeating or polymeric structure, such as a polysaccharide or peptidoglycan.

Relationships

Timestamp Action Category Detail
2013-05-31 Added RELATION has part GO:0038187 (pattern recognition receptor activity)
2013-05-31 Deleted RELATION has part GO:0008329 (signaling pattern recognition receptor activity)
2011-10-28 Added RELATION has part GO:0008329 (signaling pattern recognition receptor activity)
2008-04-01 Updated RELATION is a GO:0005488 (binding)

Other

Timestamp Action Category Detail
2013-04-18 Updated SLIM goslim_pir
2008-06-09 Added SLIM goslim_pir
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