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GO:0001150 bacterial-type RNA polymerase enhancer sequence-specific DNA binding

Term Information

ID GO:0001150
Name bacterial-type RNA polymerase enhancer sequence-specific DNA binding
Ontology Molecular Function
Definition Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site, although they can be further away or may be downstream of the promoter. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences.
PMID:11282468 PMID:20629756
Comment Note that the phrase "upstream activating sequence", or UAS is often used in S. cerevisiae literature to refer to regulatory sequences that occur in the region upstream and proximal to the core promoter. In contrast, in bacteria such as E. coli, the phrase "upstream activating sequence", or UAS is a synonym for "enhancer".
GONUTS GO:0001150 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
exact bacterial-type RNA polymerase upstream activating sequence (UAS) sequence-specific DNA binding

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:
Annotation Guidelines
Binding term considerationsLink
Considerations when annotating from ChiP assay resultsLink

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0001150:
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Protein Annotation

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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0001150. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0001150 based on the entire annotation set Co-occurrence statistics for GO:0001150 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2011-09-04 Added SYNONYM bacterial-type RNA polymerase upstream activating sequence (UAS) sequence-specific DNA binding
2011-09-04 Deleted DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences.
2011-09-04 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site, although they can be further away or may be downstream of the promoter. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences.
2011-01-30 Added TERM bacterial-type RNA polymerase enhancer sequence-specific DNA binding
2011-01-30 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences.
2011-01-30 Added RELATION is a GO:0000984 (bacterial-type RNA polymerase regulatory region sequence-specific DNA binding)
2011-01-30 Added RELATION has part GO:0001151 (bacterial-type RNA polymerase transcription enhancer sequence-specific DNA binding transcription factor activity)
2011-01-30 Added RELATION is a GO:0001158 (enhancer sequence-specific DNA binding)

Term

Timestamp Action Category Detail
2011-01-30 Added TERM bacterial-type RNA polymerase enhancer sequence-specific DNA binding

Definition/synonyms

Timestamp Action Category Detail
2011-09-04 Added SYNONYM bacterial-type RNA polymerase upstream activating sequence (UAS) sequence-specific DNA binding
2011-09-04 Deleted DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences.
2011-09-04 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site, although they can be further away or may be downstream of the promoter. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences.
2011-01-30 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is an enhancer region that helps activate transcription of a gene or operon by a bacterial-type RNA polymerase. Enhancers for sigma-54 holoenzymes are typically located 80 to 150 base pairs upstream from the transcription start site. Some transcription units dependent on sigma-70 holoenzymes may also include enhancer sequences.

Relationships

Timestamp Action Category Detail
2011-01-30 Added RELATION is a GO:0000984 (bacterial-type RNA polymerase regulatory region sequence-specific DNA binding)
2011-01-30 Added RELATION has part GO:0001151 (bacterial-type RNA polymerase transcription enhancer sequence-specific DNA binding transcription factor activity)
2011-01-30 Added RELATION is a GO:0001158 (enhancer sequence-specific DNA binding)
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