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GO:0001071 nucleic acid binding transcription factor activity

Term Information

ID GO:0001071
Name nucleic acid binding transcription factor activity
Ontology Molecular Function
Definition Interacting selectively and non-covalently with a DNA or RNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
Restrictions This term should not be used for direct manual annotation. This term may be used for mapping to external vocabularies in order to create electronic annotations. See comment below for further information.
Comment Note that this term is in the subset of terms that should not be used for direct gene product annotation. This term does not provide specificity with respect to the type of nucleic acid binding, e.g. RNA or DNA. Please use a child term that provides that specificity or, if no appropriate child term exists, please request a new term. Direct annotations to this term may be amended during annotation QC.
GONUTS GO:0001071 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
broad transcription factor activity

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:
Annotation Guidelines
Annotating to transcription factor activitiesLink

GO Slims

This term is present in the following GO Consortium-maintained GO slims:
GO slim nameCount of all terms
goslim_generic149
goslim_yeast169
goslim_chembl309

Cross-references

Database ID
InterPro IPR024187

Replaces

This term can be used instead of these obsolete terms:
GO Identifier GO Term Name Reason
GO:0016563 obsolete transcription activator activity CONSIDER GO:0001071
GO:0016564 obsolete transcription repressor activity CONSIDER GO:0001071
GO:0016986 obsolete transcription initiation factor activity CONSIDER GO:0001071
GO:0030528 obsolete transcription regulator activity CONSIDER GO:0001071

Ancestor Chart

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0001071:
Relationship To GO:0001071 Child Term Child Term Name
Is a GO:0001070 RNA binding transcription factor activity
Is a GO:0003700 transcription factor activity, sequence-specific DNA binding

Protein Annotation

Displaying annotations FIRST to LAST of TOTAL Page size: Additional filters: Bookmarkable link
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GO Identifier
GO Term Name
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Original GO Term Name
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ID Mapping

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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0001071. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0001071 based on the entire annotation set Co-occurrence statistics for GO:0001071 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2016-07-23 Deleted SLIM goslim_metagenomics
2015-05-19 Added SLIM goslim_chembl
2015-05-19 Deleted SLIM goslim_ChEMBL
2015-05-11 Added SLIM goslim_ChEMBL
2013-04-19 Added SLIM gocheck_do_not_manually_annotate
2013-04-18 Updated SLIM goslim_yeast
2013-04-18 Updated SLIM goslim_generic
2013-04-18 Updated SLIM goslim_metagenomics
2012-02-17 Added SLIM goslim_metagenomics
2012-02-10 Added SLIM goslim_generic
2011-11-17 Added RELATION part of GO:2001141 (regulation of RNA biosynthetic process)
2011-09-04 Added SYNONYM transcription factor activity
2011-08-14 Added SLIM goslim_yeast
2011-03-18 Deleted RELATION part of GO:0006350 (transcription)
2010-11-21 Added DEFINITION Interacting selectively and non-covalently with a DNA or RNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
2010-10-29 Added RELATION part of GO:0006350 (transcription)
2010-10-24 Added TERM nucleic acid binding transcription factor activity
2010-10-24 Added RELATION is a GO:0003674 (molecular_function)

Term

Timestamp Action Category Detail
2010-10-24 Added TERM nucleic acid binding transcription factor activity

Definition/synonyms

Timestamp Action Category Detail
2011-09-04 Added SYNONYM transcription factor activity
2010-11-21 Added DEFINITION Interacting selectively and non-covalently with a DNA or RNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.

Relationships

Timestamp Action Category Detail
2011-11-17 Added RELATION part of GO:2001141 (regulation of RNA biosynthetic process)
2011-03-18 Deleted RELATION part of GO:0006350 (transcription)
2010-10-29 Added RELATION part of GO:0006350 (transcription)
2010-10-24 Added RELATION is a GO:0003674 (molecular_function)

Other

Timestamp Action Category Detail
2016-07-23 Deleted SLIM goslim_metagenomics
2015-05-19 Added SLIM goslim_chembl
2015-05-19 Deleted SLIM goslim_ChEMBL
2015-05-11 Added SLIM goslim_ChEMBL
2013-04-19 Added SLIM gocheck_do_not_manually_annotate
2013-04-18 Updated SLIM goslim_yeast
2013-04-18 Updated SLIM goslim_generic
2013-04-18 Updated SLIM goslim_metagenomics
2012-02-17 Added SLIM goslim_metagenomics
2012-02-10 Added SLIM goslim_generic
2011-08-14 Added SLIM goslim_yeast
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