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GO:0000984 bacterial-type RNA polymerase regulatory region sequence-specific DNA binding

Term Information

ID GO:0000984
Name bacterial-type RNA polymerase regulatory region sequence-specific DNA binding
Ontology Molecular Function
Definition Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls the transcription of a gene or operon by a bacterial-type RNA polymerase.
Comment The word "promoter" is used variously in the literature to describe the core promoter specifically or the entire proximal regulatory region (excluding any distal enhancers) including both the core promoter and the upstream region where activating transcription factors such as Gal4 in S. cerevisiae or catabolite activator protein (CAP) in E. coli bind. To minimize ambiguity in the use of the word "promoter" in GO, we have chosen the phrase "transcription regulatory region" in order to refer to all of the regulatory regions. Regulatory regions in the DNA which control initiation may include the "core promoter" where the basal transcription machinery binds, the "core promoter proximal region" where regulatory factors other than the basal machinery bind, and "enhancer" regions which are typically more distal from the core promoter. There are also additional regulatory regions, in both the DNA and the RNA transcript, which regulate elongation or termination of transcription. ANNOTATION NOTE: Regarding annotation to "transcription regulatory region DNA binding" (GO:0044212) and any of its is_a children, note that annotation to these terms specifies DNA binding only without any statement about transcription factor activity. To make an annotation about a function of transcription factor activity, consider "sequence-specific DNA binding transcription factor activity" (GO:0003700) or its is_a children which have has_part relationships to the appropriate kind of "transcription regulatory region DNA binding".
GONUTS GO:0000984 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
related eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding

Annotation Guidance

Usage of this term is subject to the following annotation guidelines:
Annotation Guidelines
Binding term considerationsLink
Considerations when annotating from ChiP assay resultsLink

Ancestor Chart

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0000984:
Relationship To GO:0000984 Child Term Child Term Name
Is a GO:0000985 bacterial-type RNA polymerase core promoter sequence-specific DNA binding
Is a GO:0000986 bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
Is a GO:0001148 bacterial-type RNA polymerase termination site sequence-specific DNA binding
Is a GO:0001150 bacterial-type RNA polymerase enhancer sequence-specific DNA binding

Protein Annotation

Displaying annotations FIRST to LAST of TOTAL Page size: Additional filters: Bookmarkable link
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Gene Product ID
Symbol
Qualifier
GO Identifier
GO Term Name
Aspect
Original GO ID
Original GO Term Name
Evidence
Reference
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Taxon
Date
Assigned By
Product Form ID
Name
Synonym
Type
Taxon Name
Sequence

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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0000984. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0000984 based on the entire annotation set Co-occurrence statistics for GO:0000984 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2011-01-30 Added RELATION has part GO:0001130 (sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity)
2010-09-03 Added RELATION is a GO:0001017 (bacterial-type RNA polymerase regulatory region DNA binding)
2010-09-03 Added RELATION is a GO:0000976 (transcription regulatory region sequence-specific DNA binding)
2010-09-03 Added SYNONYM eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding
2010-09-03 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls the transcription of a gene or operon by a bacterial-type RNA polymerase.
2010-09-03 Added TERM bacterial-type RNA polymerase regulatory region sequence-specific DNA binding

Term

Timestamp Action Category Detail
2010-09-03 Added TERM bacterial-type RNA polymerase regulatory region sequence-specific DNA binding

Definition/synonyms

Timestamp Action Category Detail
2010-09-03 Added SYNONYM eubacterial-type RNA polymerase regulatory region sequence-specific DNA binding
2010-09-03 Added DEFINITION Interacting selectively and non-covalently with a sequence of DNA that is part of a regulatory region that controls the transcription of a gene or operon by a bacterial-type RNA polymerase.

Relationships

Timestamp Action Category Detail
2011-01-30 Added RELATION has part GO:0001130 (sequence-specific DNA binding bacterial-type RNA polymerase transcription factor activity)
2010-09-03 Added RELATION is a GO:0001017 (bacterial-type RNA polymerase regulatory region DNA binding)
2010-09-03 Added RELATION is a GO:0000976 (transcription regulatory region sequence-specific DNA binding)
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