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GO:0032221 Rpd3S complex

Term Information

ID GO:0032221
Name Rpd3S complex
Ontology Cellular Component
Definition A eukaryotically conserved histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; Rpd3p, Sin3p, Ume1p, Rco1p and Eaf3 in Saccharomyces; homologs thereof in other species).
PMID:12773392 PMID:17450151
Secondary IDs GO:0000509
GONUTS GO:0032221 Wiki Page

Synonyms

Synonyms are alternative words or phrases closely related in meaning to the term name, with indication of the relationship between the name and synonym given by the synonym scope. Click on the icon for more details.
Type Synonym
exact Rpd3C(S)
exact Clr6S complex
exact Clr6 histone deacetylase complex II'

Taxon Constraints

The use of this term should conform to the following taxon constraints:
Taxon Rule Ancestor GO ID Ancestor GO Term Name Relationship Taxon ID Taxon Reference(s)
GOTAX:0000057 GO:0005623 cell only_in_taxon 131567 cellular organisms
GOTAX:0000059 GO:0005634 nucleus only_in_taxon 2759 Eukaryota
More information on taxon constraints in GO is available here

Protein complexes

Database ID Name
IntAct rpd3s_yeast Rpd3/Sin3 small histone deacetylase complex

Ancestor Chart

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Child Terms

This table lists all terms that are direct descendants (child terms) of GO:0032221:
Term has no children

Protein Annotation

Displaying annotations FIRST to LAST of TOTAL Page size: Additional filters: Bookmarkable link
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Co-occurring Terms

These tables show the number of times the term listed in the table has been co-annotated with GO:0032221. The terms are listed in descending order of number of times the term has been co-annotated.
The table on the left is calculated using both electronic and manual-evidenced annotations, while the table on the right is calculated using only manual-evidenced annotations.
Co-occurrence statistics for GO:0032221 based on the entire annotation set Co-occurrence statistics for GO:0032221 based on non-IEA annotations only

Change Log

All changes

Timestamp Action Category Detail
2009-07-23 Updated TERM Rpd3S complex
2009-07-23 Deleted SYNONYM Rpd3S complex
2009-07-23 Added RELATION is a GO:0070822 (Sin3-type complex)
2009-07-23 Deleted RELATION part of GO:0000790 (nuclear chromatin)
2009-07-23 Deleted RELATION is a GO:0000118 (histone deacetylase complex)
2009-01-12 Added SECONDARY GO:0000509 (Rpd3S complex)
2009-01-12 Added RELATION part of GO:0000790 (nuclear chromatin)
2009-01-12 Added SYNONYM Clr6 histone deacetylase complex II'
2009-01-12 Added SYNONYM Clr6S complex
2009-01-12 Added SYNONYM Rpd3C(S)
2009-01-12 Added SYNONYM Rpd3S complex
2009-01-12 Deleted DEFINITION A eukaryotically conserved histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2009-01-12 Added DEFINITION A eukaryotically conserved histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; Rpd3p, Sin3p, Ume1p, Rco1p and Eaf3 in Saccharomyces; homologs thereof in other species).
2009-01-12 Updated TERM Rpd3/Clr6 histone deacetylase complex II'
2008-12-01 Added DEFINITION A eukaryotically conserved histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2008-12-01 Deleted DEFINITION A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2008-05-13 Added DEFINITION A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2008-05-12 Deleted DEFINITION A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2008-04-01 Updated RELATION is a GO:0000118 (histone deacetylase complex)
2007-11-27 Updated DEFINITION A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2007-11-08 Updated TERM Clr6 histone deacetylase complex II'
2006-09-03 Added TERM Clr6 histone deacetylase complex
2006-09-03 Added DEFINITION A eukaryotically conserved histone deacetylse complex composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).

Term

Timestamp Action Category Detail
2009-07-23 Updated TERM Rpd3S complex
2009-01-12 Updated TERM Rpd3/Clr6 histone deacetylase complex II'
2007-11-08 Updated TERM Clr6 histone deacetylase complex II'
2006-09-03 Added TERM Clr6 histone deacetylase complex

Definition/synonyms

Timestamp Action Category Detail
2009-07-23 Deleted SYNONYM Rpd3S complex
2009-01-12 Added SYNONYM Clr6 histone deacetylase complex II'
2009-01-12 Added SYNONYM Clr6S complex
2009-01-12 Added SYNONYM Rpd3C(S)
2009-01-12 Added SYNONYM Rpd3S complex
2009-01-12 Deleted DEFINITION A eukaryotically conserved histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2009-01-12 Added DEFINITION A eukaryotically conserved histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; Rpd3p, Sin3p, Ume1p, Rco1p and Eaf3 in Saccharomyces; homologs thereof in other species).
2008-12-01 Added DEFINITION A eukaryotically conserved histone deacetylase complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2008-12-01 Deleted DEFINITION A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2008-05-13 Added DEFINITION A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2008-05-12 Deleted DEFINITION A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2007-11-27 Updated DEFINITION A eukaryotically conserved histone deacetylse complex which deacetylates histones preferentially in promoter regions. Composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).
2006-09-03 Added DEFINITION A eukaryotically conserved histone deacetylse complex composed of a catalytic histone deacetylase subunit, a chromodomain protein, a SIN3 family co-repressor, and a WD repeat protein (Clr6p, Alp13p, Pst2p, and Prw1p respectively in Schizosaccharomyces; homologs thereof in other species).

Relationships

Timestamp Action Category Detail
2009-07-23 Added RELATION is a GO:0070822 (Sin3-type complex)
2009-07-23 Deleted RELATION part of GO:0000790 (nuclear chromatin)
2009-07-23 Deleted RELATION is a GO:0000118 (histone deacetylase complex)
2009-01-12 Added RELATION part of GO:0000790 (nuclear chromatin)
2008-04-01 Updated RELATION is a GO:0000118 (histone deacetylase complex)

Other

Timestamp Action Category Detail
2009-01-12 Added SECONDARY GO:0000509 (Rpd3S complex)
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