spacer
spacer
Type a query for QuickGO...
You can reach the search box using alt+9 (Win/IE), alt+shift+9 (Win/Firefox) or ctrl+9 (Mac)
EBIDatabasesQuickGO

GO:0000028 ribosomal small subunit assembly

The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.

Term Information

ID GO:0000028
Name ribosomal small subunit assembly
Ontology Biological Process
Definition The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
Comment
Secondary IDs

GONUTS Wiki Page

Web service: term information

Use this URI template to access this data as a service:

GTerm?id=termID&format=format

Full details can be found on the QuickGO Web Services page.

Ancestor Chart

Visual display of a section of the GO directed acyclic graph (DAG) for a single GO term. Terms in the GO are linked to parent (more general) terms and often to child (more specific) terms by one or more 'relationships'

All GO terms displayed in this graph can be clicked to display term definitions and child (descendent) terms.

Chart

Ancestor Table

Alternative display of a section of the GO, providing a concise view of the relationships connecting GO terms

All GO terms displayed in this chart can be right-clicked to display term definitions and child (descendent) terms.

GO:0008150 biological_process
GO:0016043 cellular component organization
GO:0009987 cellular process
GO:0044085 cellular component biogenesis
GO:0043933 macromolecular complex subunit organization
GO:0022607 cellular component assembly
GO:0006996 organelle organization
GO:0022613 ribonucleoprotein complex biogenesis
GO:0042254 ribosome biogenesis
GO:0034621 cellular macromolecular complex subunit organization
GO:0065003 macromolecular complex assembly
GO:0042274 ribosomal small subunit biogenesis
GO:0070925 organelle assembly
GO:0034622 cellular macromolecular complex assembly
GO:0022618 ribonucleoprotein complex assembly
GO:0042255 ribosome assembly
GO:0042257 ribosomal subunit assembly
GO:0000028 ribosomal small subunit assembly

Relationship key

Code Relationship
part of
is a
regulates
+ve regulates
-ve regulates

Child Terms

All direct descendants (child terms) available for this GO term:
P GO:0034462 small-subunit processome assembly
P GO:0034463 90S preribosome assembly

Relationship key

CodeRelationship
Ppart of
Iis a

Protein Annotation

Help: filtering, analyzing and downloading annotation

Columns:
DB
ID
Alt
Symbol
Taxon
Qualifier
GO ID
GO Term name
Reference
Ev
With
A
Date
From
1 Filter:
Show:
Selected annotation
List proteins in selected annotation
All annotation to proteins in selected annotation
Columns shown:
DB
ID
splice
Symbol
Qualifier
GO ID
Reference
Evidence
With
Aspect
Name
Synonym
Type
Taxon
Taxon Name
Date
Source
GO Name
PubMed
RowID
Sequence
Choose the columns to be shown and click:
Choose protein identifier database
Use this filter to change between different sequence identifier types. QuickGO's default is to show annotations to UniProtKB (Swiss-Prot and TrEMBL) accession numbers.

UniProtKB - UniProtKB
UniProtKB/Swiss-Prot - UniProtKB/Swiss-Prot
UniProtKB/TrEMBL - UniProtKB/TrEMBL
IPI - IPI
dictyBase - dictyBase
EcoCyc - EcoCyc
EMBL - EMBL
ENSEMBL - ENSEMBL
FB - FB
GeneDB_Spombe - GeneDB_Spombe
GeneID - GeneID
GR - GR
TIGR_CMR - TIGR_CMR
MGI - MGI
RefSeq - RefSeq
TAIR - TAIR
UniGene - UniGene
WB - WB
ZFIN - ZFIN

QuickGO maps between different identifier types by using a combination of mapping files provided by the databases, and using identifier cross-references supplied by UniProtKB.
If more than one identifier type needs to be used to map all required sequences, drag the selected databases to change the order in which identifiers are found.
Filter annotations by protein IDs from any database:
QuickGO will map identifiers to UniProtKB accession numbers unless you have specified an alternative identifier type via the 'DB' filter box.
OR - select a list of proteins:
BHF-UCL BHF-UCL
KRUK KRUK
ReferenceGenome ReferenceGenome
Filter by taxonomy
To filter by species/taxonomic group, list taxon identifiers in the text box or select one of the pre-defined taxonomic groups below.
9606 Human
10090 Mouse
40674 Mammalia
3398 Magnoliophyta (flowering plants)
2759 Eukaryota
1117 Cyanobacteria
Visit NEWT to find identifiers for other taxonomic groups
Qualifier:
(none)
colocalizes_with colocalizes_with
contributes_to contributes_to
NOT NOT
NOT|colocalizes_with NOT|colocalizes_with
NOT|contributes_to NOT|contributes_to
GO Terms:
GO:0000028
Enter a list of GO identifiers (GO:nnnnnnn), separated by space, comma or newline characters

Use these terms as a GO slim
Select the set of relationships to be applied when slimming up annotations to the selected GO term set:
Default behaviour (is_a and part_of relationships only)
is_a only
is_a, part_of, regulates, positively_regulates and negatively_regulates
Use all relationships
Custom

Find annotations that directly associate the selected terms
Find annotations to descendants of these terms (annotations will display the original GO terms applied)
Annotated from any of these references:
GO_REF:* GO Reference
GO_REF:0000002 InterPro2GO
GO_REF:0000003 EC2GO
GO_REF:0000004 Swiss-Prot Keywords2GO
GO_REF:0000019 Compara
GO_REF:0000020 HAMAP2GO
GO_REF:0000023 Subcellular Location2GO
References (with or without database prefix):
With evidence:
IMP,IGI,IPI,IDA,IEP,EXP Manual Experimental
IMP,IGI,IPI,IDA,IEP,EXP,ISS,TAS,NAS,ND,IC,RCA Manual All
IMPinferred from mutant phenotype
IGIinferred from genetic interaction
IPIinferred from physical interaction
IGCInferred from Genomic Context
ISSinferred from sequence or structural similarity
IDAinferred from direct assay
IEPinferred from expression pattern
IEAinferred from electronic annotation
TAStraceable author statement
NASnon-traceable author statement
NDno data
ICinferred by curator
RCAreviewed computational annotation
ISAinferred from sequence alignment
EXPinferred from experiment
Annotated with reference:
EC:* Enzyme Code
HAMAP:* High-quality Automated and Manual Annotation of microbial Proteomes
InterPro:* InterPro
SP_KW:* UniProt Knowledgebase keywords
SP_SL:* UniProtKB Subcellular Location identifiers
UniProtKB:* UniProtKB
Annotated with (with or without database prefix):
Advanced search
View annotation:
Columns:
DB
ID
Alt
Symbol
Taxon
Qualifier
GO ID
GO Term name
Reference
Ev
With
A
Date
From
Sample size:
4 Download
Options: gzip: limit:
Format: . Current columns, Tab Separated Values: .

Web service: annotation

Use this URI template to access this data as a service:

GAnnotation?format=tsv&limit=max-number-of-rows{&gz}{&q=advanced query}{&field=value{,value}}

Full details can be found on the QuickGO Web Services page.

Co-occurring Terms

Co-occurrence statistics

This display shows those GO terms which have been annotated to the same proteins as this term.
Terms may have been co-annotated either by electronic (IEA) or manual annotation methods. Users can decide which evidence code type should be used in the calculation of the co-occurence statistics.
Click on the 'Update' button to run the co-occurence calculation
IMP IGI IPI IGC ISS IDA IEP IEA TAS NAS ND IC RCA ISA EXP Statistics may take up to 1 minute to calculate
spacer
13ms
Hostnametomcat-7.ebi.ac.uk
Uptime11:21 5/2/2010
Data version2010-02-10-03-49-32
Terminal
spacer