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QuickGO

Dataset Statistics

GO Term Information

QuickGO contains information for 42329 GO terms, as defined in the version of the GO OWL definition file, which was downloaded at: 2014-12-25 02:17.
You can find a history of changes to the ontology here.

Annotation Updates

The annotation set was last updated on Sunday, 21 December 2014, and contains 401495427 GO annotations to 57319800 distinct proteins.
QuickGO scanned the annotations in 95846ms (0.24 microseconds per annotation).

Assigned By Annotations Date
AgBase 22808 20141219
Alzheimers_University_of_Toronto 459 20140515
ASPGD 91367 20141214
BHF-UCL 32065 20141219
CACAO 1008 20140725
CGD 28103 20141214
DFLAT 612 20140212
dictyBase 17993 20141219
EcoCyc 7806 20140528
EcoliWiki 2267 20140623
Ensembl 3813066 20141220
EnsemblFungi 29301 20141220
EnsemblPlants/Gramene 1210412 20141220
FlyBase 114677 20141016
GDB 130 20060216
GeneDB_Lmajor 541 20140702
GeneDB_Pfalciparum 5171 20140702
GeneDB_Tbrucei 3083 20140702
GOC 24010316 20141220
GO_Central 172047 20141217
GR 1504 20090826
HGNC 5314 20140223
HPA 12563 20141106
IntAct 56893 20141221
InterPro 172932228 20141220
JCVI 25323 20090722
LIFEdb 467 20100607
MENGO 101 20130221
MGI 639873 20141217
MTBBASE 7640 20141031
NTNU_SB 1232 20141118
PAMGO_GAT 119 20070627
PAMGO_MGG 14999 20080303
ParkinsonsUK-UCL 2488 20141218
PINC 15092 20130327
PomBase 31571 20141027
PseudoCAP 1160 20140826
Reactome 81392 20141121
RGD 50153 20141212
Roslin_Institute 78 20140331
SGD 42396 20141219
SYSCILIA_CCNET 5 20140121
TAIR 92874 20141110
TIGR 50390 20071113
UniProt 197820955 20141220
WormBase 22584 20141219
ZFIN 22801 20141210



How the QuickGO Dataset is Generated

Annotation Blacklist

This list aims to correct annotations to UniProtKB accessions from incorrect annotations inferred from electronic annotation (IEA) methods that are supplied by the UniProt-GOA project to the GO Consortium. Details of the annotation blacklist can be found here.

Annotation Post-processing

UniProt-GOA will be displaying some electronic annotations that have been subject to minor post-processing to ensure taxonomic correctness of annotated GO terms. Details of the annotation post-processing can be found here.

GO Consortium Annotations

GO annotations from member groups of the GO Consortium may also be viewed in the AmiGO browser. However, the display of annotations between QuickGO and AmiGO can vary, due to the different update frequencies of the two tools plus the fact that QuickGO provides electronic (IEA-coded) annotations for all species in UniProtKB with GO annotations, while AmiGO only supplies electronic annotations for 12 model organism species. Additionally, it should be noted that UniProt-GOA only integrates manual annotations from external groups, and external annotations can only be incorporated where external sequence identifiers can be mapped to corresponding UniProtKB accession numbers and the GO identifier associated has not been made secondary.

PDB Gene Associations

QuickGO does not contain the GO annotations to PDB entries from the PDB Gene Association File since the entity annotated in this file is a protein structure rather than a protein. The PDB Gene Association File can be downloaded here

How to download and install your own copy of QuickGO

Instructions on how to download the QuickGO software (including the source code), plus links to the latest data sets can be found here.



How to cite UniProt-GOA

Cite UniProt-GOA

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Please send comments, suggestions or bug reports to goa@ebi.ac.uk. Click here for details of how to cite UniProt-GOA and QuickGO.
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