UniProt Knowledgebase release 15.12
UniProt Knowledgebase release 15.12 includes Swiss-Prot release 57.12 and TrEMBL release 40.12...
more
UniProtKB/Swiss-Prot Release 57.12 of 15-Dec-2009 contains 513877 sequence entries...
more
UniProtKB/TrEMBL Release 40.12 of 15-Dec-2009 contains 5965463 sequence entries.
This represents an increase of 37%... more
Dec 09, 2009
New release of International Protein Index (IPI) database The latest release of IPI is now available... more
Dec 04, 2009
IntEnz release 55, Rhea release 8 IntEnz release 55 and Rhea release 8
are already available.
UniProt 15.11 and Reactome 30 have been used for cross-references.
IntEnzXML includes now cross references to Rhea reactions.
Dec 02, 2009
IntAct Release 114
IntAct contains 202,826 binary interactions from 4,174 manually
curated publications. All data is also available on the public FTP
site.
Nov 30, 2009
GOA Released
The new release of GOA contains UniProt GO v77.0, GOA Human v79.0, GOA Mouse v65.0, GOA Rat v65.0, GOA Arabidopsis v52.0, GOA Zebrafish v52.0, GOA Chicken v49.0, GOA Cow v42.0, GOA PDB v66.0 and GOA Proteome Sets 54.0... more
Nov 20, 2009
EMBL-EBI articles are top of the list Articles on three resources hosted by EMBL-EBI (PDBe, Ensembl
Genomes and Gene Expression Atlas) are highlighted as featured articles
in the latest Database issue of Nucleic Acids Research. Featured
articles are selected by the journal's Executive Editors based upon
their originality, significance and scientific excellence... more
Nov 06, 2009
New release of International Protein Index (IPI) database The latest release of IPI is now available... more
Nov 05, 2009
IntEnz release 54, Rhea release 7 IntEnz release 54 and Rhea release 7
are already available.
UniProt 15.10 and Reactome 30 have been used for cross-references.
Nov 04, 2009
InterPro release 23.1
We are pleased to announce the release of InterPro 23.1, which
contains 19269 entries and 68 new methods, which include new methods
from PANTHER, HAMAP and PROSITE and covers 76.5% of UniProt
Knowledgebase release 15.10.
UniParc (uniparc_match.tar.gz) and UniMES (unimes_match.tar.gz) matches
to InterPro methods have been updated and are available from the ftp site. For full details of the release please see the Release Notes.
Nov 04, 2009
IntAct Release 113
IntAct contains 202,419 binary interactions from 4,148 manually curated
publications. All data is also available on the public FTP site.
Nov 4, 2009
UniProt Knowledgebase release 15.10
UniProt Knowledgebase release 15.10 includes Swiss-Prot release 57.10 and TrEMBL release 40.10...
more
UniProtKB/Swiss-Prot Release 57.10 of 04-Nov-09 contains 512205 sequence entries...
more
UniProtKB/TrEMBL Release 40.10 of 04-Nov-09 contains 9696103 sequence entries.
This represents an increase of 32%... more
Oct 16, 2009
New release of International Protein Index (IPI) database The latest release of IPI is now available... more
Oct 14, 2009
IntAct Release 112
IntAct contains 201,652 binary interactions from 4,119 manually curated
publications. All data is also available on the public FTP site.
Oct 13, 2009
UniProt Knowledgebase release 15.9
UniProt Knowledgebase release 15.9 includes Swiss-Prot release 57.9 and TrEMBL release 40.9...
more
UniProtKB/Swiss-Prot Release 57.9 of 13-Oct-09 contains 510076 sequence entries...
more
UniProtKB/TrEMBL Release 40.9 of 13-Oct-09 contains 5346359 sequence entries.
This represents an increase of 29%... more
Oct 09, 2009
IntEnz release 53 / Rhea release 6 IntEnz release 53 and Rhea release 6
are already available.
Rhea identifiers can be used now to search IntEnz.
UniProt 15.8 and Reactome 30 have been used for cross-references.
Oct 08, 2009
GOA Released
The new release of GOA contains UniProt GO v76.0, GOA Human v78.0, GOA Mouse v64.0, GOA Rat v64.0, GOA Arabidopsis v51.0, GOA Zebrafish v51.0, GOA Chicken v48.0, GOA Cow v41.0, GOA PDB v67.0 and GOA Proteome Sets 53.0... more
Oct 08, 2009
New portal for plant genomics will support research into improved crops
Today sees the launch of Ensembl Plants – a freely available web resource for plant genomics research – by EMBL-EBI, in partnership with the Cold Spring Harbor Laboratory, USA. Ensembl Plants allows researchers worldwide to access and visualise the results of genome-scale experiments in different plant species and will make it easier for scientists to improve the productivity and health of crops... more
Oct 02, 2009
Research takes us a step closer to longer, healthier lives
Scientists have shown that genetically manipulating a key
molecular pathway in mice can mimic the longevity effects of a calorie
restricted diet. The research, a collaborative effort that includes
researchers at the EMBL-European Bioinformatics Institute, is published
today in the journal Science and holds promise for drug
treatments for age-related diseases ... more
Sep 30, 2009
RESID Database Release 59.00
Release 59.00 of the RESID Database of Protein Modifications
is available by ftp at the EBI or at the NCIFCRF ...more
Sept 28, 2009
Ensembl Release 56
The Ensembl project is pleased to announce release 56 of Ensembl
...more
Sep 26, 2009
IntAct Release 110
IntAct contains 201,094 binary interactions from 4,085 manually curated
publications. All data is also available on the public FTP site.
Sep 24, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ... more
Sep 23, 2009
InterPro release 23.0
We are pleased to announce the release of InterPro 23.0, which
contains 19150 entries and 434 new methods, which include new methods
from PANTHER, HAMAP and the new releases from PROSITE and SMART,
covering 76.4% of UniProt Knowledgebase release 15.8 ...more
Sep 22, 2009
UniProt Knowledgebase release 15.8
UniProt Knowledgebase release 15.8 includes Swiss-Prot release 57.8 and TrEMBL release 40.8...
more
UniProtKB/Swiss-Prot Release 57.8 of 22-Sep-09 contains 509019 sequence entries...
more
UniProtKB/TrEMBL Release 40.8 of 22-Sep-09 contains 9325547 sequence entries. This represents an increase of 26%... more
Sep 10, 2009
EMBL Release 101
The EMBL Nucleotide Sequence Database was frozen to make Release 101 on
26-Aug-2009. The release contains 163,656,234 sequence entries
comprising 283,748,816,763 nucleotides
...more
Sep 08, 2009
IntAct Release 109
IntAct contains 200,395 binary interactions from 4,064 manually curated
publications. All data is also available on the public FTP site.
Sep 03, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ... more
Sept 01, 2009
GOA Released
The new release of GOA contains UniProt GO v75.0, GOA Human v77.0, GOA Mouse v63.0, GOA Rat v63.0, GOA Arabidopsis v50.0, GOA Zebrafish v50.0, GOA Chicken v47.0, GOA Cow v40.0, GOA PDB v66.0 and GOA Proteome Sets 52.0... more
Sep 01, 2009
UniProt Knowledgebase release 15.7
UniProt Knowledgebase release 15.7 includes Swiss-Prot release 57.7 and TrEMBL release 40.7...
more
UniProtKB/Swiss-Prot Release 57.7 of 01-Sep-09 contains 497293 sequence entries...
more
UniProtKB/TrEMBL Release 40.7 of 01-Sep-09 contains 9145906 sequence entries. This represents an increase of 24%... more
Aug 28, 2009
RESID Database Release 58.02
Release 58.02 of the RESID of Protein Modifications is available by ftp at the EBI in the directory or at the NCIFCRF in the directory ...more
Aug 28, 2009
IntEnz release 52
IntEnz release 52 (http://www.ebi.ac.uk/intenz) is already available.
This is the first release of IntEnz as an open source project. UniProt 15.6 has been used for cross-references.Next release (53) is flexibly scheduled for October 1st.
Aug 27, 2009
IntAct Release 108
IntAct contains 200,056 binary interactions from 4,035 manually curated publications. All data is also available on the public FTP site
Aug 26, 2009
ChEBI release 60
ChEBI release 60 contains 18643 entities with 266 of those submitted via the ChEBI submission tool. ChEBI now includes publications
referencing its entries. The next ChEBI release will be September 30th 2009. See our entity of the month, Cocaine. All data are also available on the public FTP site
Aug 25, 2009
UK leads European research programme with £10M investment in bioscience data handling capacity The UK has made its first substantial commitment to a
major emerging pan-European science project with a £10M investment by the Biotechnology and Biological Sciences Research Council (BBSRC). BBSRC has awarded funding to the European Molecular Biology Laboratory’s
European Bioinformatics Institute to permit a dramatic increase in the institute’s data storage and handling capacity... more
Aug 07, 2009
Launch of the first standard graphical notation for biology EBI researchers and their colleagues in 30 labs worldwide have released a new set of standards for graphically representing biological information. This visual language should make it easier to exchange complex information, so that models are accurate, efficient and readily understandable. The new standard, called the Systems Biology Graphical Notation (SBGN), is published today in Nature Biotechnology... more
Aug 06, 2009
IntEnz release 51 IntEnz release 51 is already available. UniProt 15.6 has been used for cross-references. Next release (52) is flexibly scheduled for August 27th.
Aug 05, 2009
IntAct Release 107 IntAct contains 195,719 binary interactions from 4,002 manually
curated publications. All data is also available on the public FTP site ...more
Aug 03, 2009
RESID Database Release 58.01 Release 58.01 of the RESID of Protein Modifications is available by ftp at the EBI in the directory or at the NCIFCRF in the directory ...more
Jul 30, 2009
GOA Released
The new release of GOA contains UniProt GO v74.0, GOA Human v76.0, GOA Mouse v62.0, GOA Rat v62.0, GOA Arabidopsis v49.0, GOA Zebrafish v49.0, GOA Chicken v46.0, GOA Cow v39.0, GOA PDB v65.0 and GOA Proteome Sets 51.0... more
Jul 30, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ... more
Jun 29, 2009
ChEBI Release 59 ChEBI release 59 contains 18414 entities with 202 of those submitted via
the ChEBI submission tool. The next ChEBI release will be August 26th 2009.
See our entity of the month, Copernicium.
All data is also available on the public FTP site.
Jun 28, 2009
UniProt Knowledgebase release 15.6
UniProt Knowledgebase release 15.6 includes Swiss-Prot release 57.6 and TrEMBL release 40.6...
more
UniProtKB/Swiss-Prot Release 57.6 of 28-Jun-09 contains 495880 sequence entries...
more
UniProtKB/TrEMBL Release 40.6 of 28-Jun-09 ontains 8926016 sequence entries
comprising 2886024699 amino acids.
1569144 sequences have been added since release 40, the sequence data of
2860 existing entries has been updated and the annotations of
4516603 entries have been revised. This represents an increase of 21%... more
Jul 28, 2009
InterPro release 22.0
We are pleased to announce the release of InterPro 22.0, which now
includes HAMAP (High-quality Automated and Manual Annotation of
microbial Proteomes) as a new member database. Release 22.0 contains
18843 entries, with 280 new methods from HAMAP and 135 from PRODOM,
covering 76.3% of UniProt Knowledgebase release 15.6.
UniParc (uniparc_match.tar.gz) and UniMES (unimes_match.tar.gz) matches
to InterPro methods have been updated and are available from the ftp site.
For full details of the release please see the Release
Notes.
Jul 21, 2009
IntAct Release 106
IntAct contains 195,553 binary interactions from 3,989 manually
curated publications. All data is also available on the public FTP
site.
Jul 14, 2009
New InterPro BioMart Service Now Available InterPro BioMart
We are pleased to announce the release of a new BioMart service
providing data from InterPro, the database of protein families,
domains, regions, repeats and sites ...more
Jul 14, 2009
Ensembl Release 55
The Ensembl project is pleased to announce release 55 of Ensembl
...more
Jul 14, 2009
IntAct Release 105
IntAct contains 194,978 binary interactions from 3,974 manually curated publications. All data is also available on the public FTP site: ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-07-10/
Jul 09, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ... more
Jul 08, 2009
EMBL-EBI Director Janet Thornton awarded an ISCB Accomplishment by a Senior Scientist Award Janet Thornton, Director of EMBL-EBI, has been awarded a Senior
Scientist Award by the ISCB Fellows Programme in recognition of her
outstanding contributions to the fields of computational biology and
bioinformatics. The award was made at the ISMB/ECCB 2009 conference in
Stockholm, Sweden ...more
Jul 07, 2009
UniProt Knowledgebase release 15.5
UniProt Knowledgebase release 15.5 includes Swiss-Prot release 57.5 and TrEMBL release 40.5...
more
UniProtKB/Swiss-Prot Release 57.5 of 07-Jul-09 contains 471472 sequence entries...
more
UniProtKB/TrEMBL Release 40.5 of 07-Jul-09 of UniProtKB/TrEMBL contains 8760751 sequence entries
comprising 2828570079 amino acids.
1304179 sequences have been added since release 40, the sequence data of
2480 existing entries has been updated and the annotations of
4382329 entries have been revised. This represents an increase of 16%.
... more
Jul 02, 2009
GOA Release
The new release of GOA contains UniProt GO v73.0, GOA Human v75.0, GOA Mouse v61.0, GOA Rat v61.0, GOA Arabidopsis v48.0, GOA Zebrafish v48.0, GOA Chicken v45.0, GOA Cow v38.0, GOA PDB v64.0 and GOA Proteome Sets 50.0... more
Jul 01, 2009
EMBL-EBI and University of Manchester launch major new e-
science resource Biocatalogue.org - a
curated registry of web services for the life sciences - is launched
today. Biocatalogue will make it easier for scientists to find
bioinformatics services that meet their research needs by providing a
single search point. Providers, expert curators and users monitor the
catalogue and provide high quality information on each service,
including ratings. This type of systematic access has the potential to
significantly accelerate the work of biomedical researchers The
project has been led by Prof Carole Goble at The University of
Manchester and Rodrigo Lopez at EMBL-EBI... more
Jun 30, 2009
Gerard Kleywegt to head Protein Data Bank Europe
From 1 July 2009, Gerard Kleywegt will lead the Protein
Data Bank Europe (PDBe) project. Gerard has served on the PDBe
Scientific Advisory Board for the last few years and has been on the
wwPDB advisory committee. Gerard will replace Kim Henrick, who has
headed the PDBe since 2001... more
Jun 30, 2009
RESID Release 58.00
Release 58.00 of the RESID Database of Protein Modifications
is available by ftp at the EBI or at the NCIFCRF. See the release notes for more information on the this release of the
RESID Database.
Jun 25, 2009
IntEnz release 50 IntEnz release 50 is already available. UniProt 15.4 has been used for cross-references. Next release (51) is flexibly scheduled for August 4th.
Jun 25, 2009
ChEBI Release 58
ChEBI release 58 contains 18186 entities with 175 of those submitted via
the ChEBI submission tool. The next ChEBI release will be July 29th 2009.
See our entity of the month, Capecitabine
All data is also available on the public FTP site
Jun 23, 2009
IntAct Release 104
IntAct contains 194,558 binary interactions from 3,965 manually curated publications. All data is also available on the public FTP site: ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-06-19/
Jun 23, 2009
Sweden is the first country to pledge long-term funding for ELIXIR
The Swedish funding agencies (the Swedish Energy Agency, Fas, Formas,
the Swedish Research Council and VINNOVA) have suggested the government
to allocate a total of 19 million SEK (1.7 million Euro) over three
years to ELIXIR and the Swedish Bioinformatics Infrastructure for Life
Sciences (BILS), which would make Sweden the first country to secure
long-term funding for ELIXIR. The Swedish government has expressed its
intention to substantially increase research funding in several
strategic areas, including national infrastructures, and a final
decision along these lines is expected during the autumn 2009.
Bioinformatics is increasingly
important in the interpretation of these data. We are therefore very
enthusiastic about this new long-term funding for the BILS
bioinformatics infrastructure in Sweden, which works within a European
perspective and interacts closely with ELIXIR"... more
Jun 17, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ... more
Jun 16, 2009
InterPro release 21.0
We are pleased to announce the release of InterPro 21.0, containing
18638 entries covering 76.8% of UniProtKB. This release includes 169 new
entries with 126 new methods from PRINTS and PRODOM.
UniParc (uniparc_match.tar.gz) and UniMES (unimes_match.tar.gz) matches
to InterPro methods have been updated and are available from the ftp
site.
For full details of the release please see the Release
Notes.
Jun 16, 2009
UniProt Knowledgebase release 15.4
UniProt Knowledgebase release 15.4 includes Swiss-Prot release 57.4 and TrEMBL release 40.4...
more
UniProtKB/Swiss-Prot Release 57.4 of 16-Jun-09 contains 470369 sequence entries...
more
UniProtKB/TrEMBL Release 40.4 of 16-Jun-09 contains 8594382 sequence entries comprising 2774832018 amino acids. 1128426 sequences have been added since release 40, the sequence data of 2330 existing entries has been updated and the annotations of 4332439 entries have been revised. This represents an increase of 14%... more
Jun 16, 2009
IntAct Release 103
IntAct contains 193,716 binary interactions from 3,963 manually curated publications. All data is also available on the public FTP site: ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-06-12/
Jun
15, 2009
EMBL Release 100
The EMBL Nucleotide Sequence Database was frozen to make Release 100 on
29-May-2009. The release contains 161,580,181 sequence entries
comprising 275,798,912,115 nucleotides ...more
Jun
15, 2009
Mapping gene expression with Gene Expression Atlas
Today, researchers at EMBL-EBI launch a new database, the Gene Expression Atlas, which allows scientists to search and compare gene expression data at unprecedented detail and scope. Observing how gene expression varies in different cell types, tissues and under disease conditions can help researchers understand gene function and to develop new drugs and therapies...more
Jun 12, 2009
RESID Release 57.01
Release 57.01 of the RESID Database of Protein Modifications
is available by ftp at the EBI or at the NCIFCRF. See the release notes for more information on the this release of the
RESID Database.
Jun
05, 2009
IntAct Release 102
IntAct release 102 contains 192,887 binary interactions from 3,944 manually
curated publications. All data is also available on the public FTP
site.
May
27, 2009
GOA Release
The new release of GOA contains UniProt GO v72.0, GOA Human v74.0, GOA Mouse v60.0, GOA Rat v60.0, GOA Arabidopsis v47.0, GOA Zebrafish v47.0, GOA Chicken v44.0, GOA Cow v37.0, GOA PDB v63.0 and GOA Proteome Sets 49.0... more
May 27, 2009
ChEBI Release 57
ChEBI Release 57 contains new links to NMRShiftDB.
It also contains just under 17,963 manually annotated entries of which
108 entries have been submitted via the ChEBI Submission tool. The next ChEBI Release will be on the
24 June 2009.
See our entity of the month, Oseltamivir. All data is also available on the public FTP site:
ftp://ftp.ebi.ac.uk/pub/databases/chebi/
May 26, 2009
UniProt Knowledgebase release 15.3
UniProt Knowledgebase release 15.3 includes Swiss-Prot release 57.3 and TrEMBL release 40.3...
more
UniProtKB/Swiss-Prot Release 57.3 of 26-May-09 contains 468851 sequence entries...
more
UniProtKB/TrEMBL Release 40.3 of 26-May-09 contains 7916844 sequence entries comprising 2577542687 amino acids. 445798 sequences have been added since release 40, the sequence data of 1362 existing entries has been updated and the annotations of 3670156 entries have been revised. This represents an increase of 6%... more
May 20, 2009
IntAct Release 101
IntAct contains 190,521 binary interactions from 3,934 manually curated publications. All data is also available on the public FTP site: ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-05-15/
May 11, 2009
InterPro release 20.0
We are pleased to announce the release of InterPro 20.0, containing
18469 entries covering 77.0% of UniProtKB. This release includes 10
57 new entries representing 1611 new methods from Pfam, PRODOM, PANTHER
and TIGRFAMs.
UniParc (uniparc_match.tar.gz) and UniMES (unimes_match.tar.gz) matches
to InterPro methods have been updated and are
available from the ftp
site.
For full details of the release please see the Release
Notes.
May 11, 2009
IntAct Release 100
IntAct contains 189,994 binary interactions from 3,920 manually
curated publications. All data is also available on the public FTP
site: ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-05-05
May 11, 2009
IntEnz release 49 IntEnz release 49 is already available.
New in this release:
One new subsubclass (EC 1.17.7) in the enzyme classification.
Wherever possible, reactions have been mapped to Rhea and their participants
to ChEBI.
IntEnz available now in BioPAX level 2 format!
UniProt 15.2 has been used for cross-references.
May 08, 2009
Release 54 of Ensembl
The Ensembl project is pleased to announce release 54 of Ensembl
(http://www.ensembl.org/).
Highlights of this release are:
New Zv8 zebrafish assembly
Comparative alignment text displays for variations and regions
Ability to add personal notes to any Gene or Transcript
The GRCh37 human assembly released in February 2009
The callJacc3 marmoset assembly
May 07, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ...more
May 05, 2009
UniProt Knowledgebase release 15.2
UniProt Knowledgebase release 15.2 includes Swiss-Prot release 57.2 and TrEMBL release 40.2...
more
UniProtKB/Swiss-Prot Release 57.2 of 05-May-09 contains 462764 sequence entries,
comprising 163773385 amino acids abstracted from 178290 references.
0 sequences have been added since release 57.0, the sequence data of
0 existing entries has been updated and the annotations of
0 entries have been revised...
more
UniProtKB/TrEMBL Release 40.2 of 05-May-09 contains 7695149 sequence entries comprising 2506224652 amino acids. 215676 sequences have been added since release 40, the sequence data of 1252 existing entries has been updated and the annotations of 3596189 entries have been revised. This represents an increase of 3%... more
Apr
29, 2009
ChEBI Release 56 with SDF Files
SDF files are now available with ChEBI Release 56. They can be exported
via the Downloads section or the search results page. We also have
automatically generated links from IntEnz (www.ebi.ac.uk/intenz/) and
Rhea (www.ebi.ac.uk/rhea/). This release contains 17842 annotated
compounds with 74 of them new submissions entered via the ChEBI
submission tool. The next ChEBI Release will be on the 27 May 2009.
Launch of new Ensembl Genomes and new-look Ensembl website means more genome power at your fingertips
Today sees the release of Ensembl Genomes, a web-based browser that allows anyone to examine the genomes of much of life on earth. Ensembl Genomes is the new younger sibling of the Ensembl genome browser, which opens up the power of Ensembl to non-vertebrate species - plants, fungi, bacteria, metazoa and protists - for the first time ... more
Apr 16, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ...more
Apr 14, 2009
UniProt Knowledgebase release 15.1
UniProt Knowledgebase release 15.1 includes Swiss-Prot release 57.1 and TrEMBL release 40.1...
more
UniProtKB/Swiss-Prot Release 57.1 of 14-Apr-09 contains 462764 sequence entries,
comprising 163773385 amino acids abstracted from 178290 references.
34128 sequences have been added since release 57.0, the sequence data of
174 existing entries has been updated and the annotations of
27819 entries have been revised...
more
UniProtKB/TrEMBL Release 40.1 of 14-Apr-2009 contains 7527796 sequence entries comprising 2456091386 amino acids. 38583 sequences have been added since release 40, the sequence data of 41 existing entries has been updated and the annotations of 1125219 entries have been revised... more
Apr 07, 2009
IntAct Release 98
IntAct contains 189,489 binary interactions from 3,893 manually curated
publications. All data is also available on the public FTP site: ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-04-03
Mar 31, 2009
RESID Release 57.00
Release 57.00 of the RESID Database of Protein Modifications
is available by ftp at the EBI or at the NCIFCRF.
See the release notes for more information on the this release of the
RESID Database.
Mar 26, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ...more
Mar 24, 2009
UniProt Knowledgebase release 15.0
UniProt Knowledgebase release 15.0 includes Swiss-Prot release 57.0 and TrEMBL release 40.0...
more
UniProtKB/Swiss-Prot Release 57.0 of 24-Mar-09 contains 428'650 sequence entries, comprising 154'416'236 amino acids abstracted from 177'584 references. 36'053 sequences have been added since release 56.0, the sequence data of 2'010 existing entries have been manually updated and the annotations of 368'500 entries have been revised...
more
UniProtKB/TrEMBL Release 40.0 of 24-Mar-2009 contains 7'753'442 sequence entries, comprising 2'459'135'421 amino acids. 1'700'878 sequences have been added since release 39.0, the sequence data of 24'829 existing entries has been updated and the annotations of 4'218'268 entries have been revised. This represents an increase of 31%...
more
Mar 13, 2009
IntEnz Release 48 IntEnz release 48 is already available.
Two new entries and two changes in the classification have been included in this release.
UniProt 14.9 has been used for cross-references.
Mar 10, 2009
GOA Release The new release of GOA contains UniProt GO v70.0, GOA Human v72.0, GOA Mouse v58.0, GOA Rat v58.0, GOA Arabidopsis v45.0, GOA Zebrafish v45.0, GOA Chicken v42.0, GOA Cow v35.0, GOA PDB v61.0 and GOA Proteome Sets 47.0 ...more
Mar 10, 2009
IntAct Release 97 IntAct contains 189,082 binary interactions from 3,865 manually curated
publications. All data is also available on the public FTP site:
ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-03-06
Mar 10, 2009
A census of human transcription factors reveals their secrets By incorporating publicly available genomic data sets and analysing over 1,000 transcription factors, Juanma Vaquerizas, a researcher in the Luscombe group at EMBL-EBI and his colleagues have provided new understanding of how transcription factors in humans might operate. The study is published online in advance of publication in Nature Reviews Genetics...more
Mar 09, 2009
EMBL release 99 The EMBL Nucleotide Sequence Database was frozen to make Release 99 on
26-FEB-2009. The release contains 158,001,051 sequence entries
comprising 270,341,262,540 nucleotides ...more
Mar 03, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ...more
Mar 03, 2009
UniProt v14.9 released
UniProt Release 14.9 consists of UniProtKB/Swiss-Prot Protein Knowledgebase Release 56.9 and UniProtKB/TrEMBL Protein Database Release 39.9... more
Mar 03, 2009
UniProtKB/Swiss-Prot v56.9 released
Release 56.9 of UniProtKB/Swiss-Prot contains 412525 entries...
more
Mar 03, 2009
UniProtKB/TrEMBL v39.9 released
Release 39.9 of UniProtKB/TrEMBL contains 7341751 sequence entries, this represents an increase of 26%...
more
Feb 24, 2009
IntAct Release 96
IntAct contains 188,838 binary interactions from 3,838 manually curated
publications. All data is also available on the public FTP site: ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-02-20.
Feb 24, 2009
GOA Released The new release of GOA contains UniProt GO v69.0, GOA Human v71.0, GOA Mouse v57.0, GOA Rat v57.0, GOA Arabidopsis v44.0, GOA Zebrafish v44.0, GOA Chicken v41.0, GOA Cow v34.0, GOA PDB v60.0 and GOA Proteome Sets 46.0... more
Feb 13, 2009
New release of International Protein Index (IPI) database
The latest release of IPI is now available ...more
Feb 11, 2009
IntAct Release 95
IntAct contains 188,292 binary interactions from 3,812 manually curated publications. All data is also available on the public FTP site: ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-02-06.
Feb 10, 2009
UniProt v14.8 released
UniProt Release 14.8 consists of UniProtKB/Swiss-Prot Protein Knowledgebase Release 56.8 and UniProtKB/TrEMBL Protein Database Release 39.8... more
Feb 10, 2009
UniProtKB/Swiss-Prot v56.8 released
Release 56.8 of UniProtKB/Swiss-Prot contains 410518 entries...
more
Feb 10, 2009
UniProtKB/TrEMBL v39.8 released
Release 39.8 of UniProtKB/TrEMBL contains 7157600 sequence entries, this represents an increase of 22%...
more
Jan 30, 2009
RESID Release 56.01
Release 56.01 of the RESID Database of Protein Modifications
is available by ftp at the EBI or at the NCIFCRF.
See the release notes for more information on the this release of the
RESID Database.
Jan 29, 2009
InterPro release 19.0
We are pleased to announce the release of InterPro 19.0, it contains
17412 entries covering 76.2% of UniProtKB with new methods from Pfam,
PANTHER, Gene3D and SUPEFAMILY.
UniParc (uniparc_match.tar.gz) and UniMES (unimes_match.tar.gz) matches
to InterPro methods have been updated and are available from the ftp
site.
For full details of the release please see the Release Notes.
Jan 29, 2009
IntAct Release 94
IntAct contains 187,839 binary interactions from 3,791 manually curated
publications. All data is also available on the public FTP site:
ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-01-23.
EMBL release 98
The EMBL Nucleotide Sequence Database was frozen to make Release 98 on
12-JAN-2009. The release contains 155,114,144 sequence entries
comprising 265,307,725,081 nucleotides ...more
Jan 26, 2009
Re-write the textbooks: transcription is bidirectional
A genome wide study of transcription in yeast has
redefined the concept of promoters. Researchers in the groups of Lars
Steinmetz at EMBL in Heidelberg, Germany, and Wolfgang Huber at EMBL-EBI
in Hinxton, UK, have unravelled how yeast generates its transcripts and
have come a step closer to understanding their function. The study is
published online in the current issue of Nature... more
Jan 22, 2009
GOA Released
The new release of GOA contains UniProt GO v68.0, GOA Human v70.0, GOA Mouse v56.0, GOA Rat v56.0, GOA Arabidopsis v43.0, GOA Zebrafish v43.0, GOA Chicken v40.0, GOA Cow v33.0, GOA PDB v59.0 and GOA Proteome Sets 45.0... more
Jan 21, 2009
IntAct Release 93
IntAct contains 187,118 binary interactions from 3,758 manually curated
publications. All data is also available on the public FTP site:
ftp://ftp.ebi.ac.uk/pub/databases/intact/2009-01-16.
