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IPI - International Protein Index - Source databases for IPI


IPI is assembled from protein sequence information taken from the following 5 data sources:

Database Description Download
UniProtKB/Swiss-Prot
A high quality manually annotated database of protein sequences, maintained by the Swiss Institute of Bioinformatics and the European Bioinformatics Institute. Download UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
An automatically annotated supplement to UniProtKB/Swiss-Prot. Download UniProtKB/TrEMBL
RefSeq
A reference set of protein sequences maintained by the National Center for Biotechnology Information. Download Human RefSeq

Download Mouse RefSeq

Download Rat RefSeq

Download Zebrafish RefSeq

Download latest Plant RefSeq release

Download latest Vertebrate_other RefSeq release

Download latest Vertebrate_mammalian RefSeq release

Ensembl
A joint project between the EBI and the Sanger Centre to develop a software system which produces and maintains automatic annotation on eukaryotic genomes. Download Human Ensembl

Download Mouse Ensembl

Download Rat Ensembl

Download Zebrafish Ensembl

Download Chicken Ensembl

Download Cow Ensembl

TAIR
The Arabidopsis Information Resource (TAIR) provides a comprehensive resource for the scientific community working with Arabidopsis thaliana, a widely used model plant. Download Arabidopsis sequences
H-InvDB
H-Invitational Database (H-InvDB) is a human gene database, with integrative annotation of full-length cDNA clones. The representative set is used in IPI as a supplementary set. Download H-InvDB representative sequences
Vega

The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality, frequently updated, manual annotation of vertebrate finished genome sequence.

Download Human Vega

Download Mouse Vega

Download Zebrafish Vega


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