Current Composition of Chicken GOA



The following table describes the latest version of GOA Chicken (version 105), released on 10 July, 2014 and assembled using the publicly released data available in the source databases on 05 July, 2014.


GO Annotation Source Number of Associations Number of Distinct Proteins
Electronic GO annotation using InterPro to GO mapping 19049 9562
Electronic GO annotation using Hamap to GO mapping 273 76
Electronic GO annotation using Swiss-Prot keyword to GO mapping 7541 4702
Electronic GO annotation using UniProt Subcellular Location to GO mapping 2192 1752
Electronic GO annotation using EC to GO mapping 519 463
Electronic GO annotation using Compara projections 59198 8532
Electronic GO annotation using UniPathway to GO mapping 206 193
Inferred electronic annotations based on GOC rules 3790 2677
Total Electronic GO annotation 92768 14186
Manual GO annotation by UniProt 3689 661
Manual GO annotation by AgBase 1072 219
Manual GO annotation by MGI 29 19
Manual GO annotation by BHF-UCL 109 35
Manual GO annotation by HGNC 47 11
Manual GO annotation by Roslin Institute 22 9
Manual GO annotation by Reactome 730 132
Manual GO annotation by IntAct 165 81
Manual GO annotation by DFLAT 15 8
Manual GO annotation by RefGenome 1997 403
Inferred manual and electronic annotations based on GOC rules 4034 2800
Manual GO annotation by UniProt for Automated Function Prediction SIG 41 9
Inferred manual annotations based on GOC rules 244 204
Total Manual GO annotations 8160 1403
Total GOA annotations 100928 14279
Number of distinct Pubmed references 427
Total number of Pubmed references 1534