Current Composition of Chicken GOA



The following table describes the latest version of GOA Chicken (version 126), released on 13 April, 2016 and assembled using the publicly released data available in the source databases on 09 April, 2016.


GO Annotation Source Number of Associations Number of Distinct Gene Products
Total GOA annotations 132053 15547
Total Electronic GO annotation 101613 14753
Total Manual GO annotations 30440 5650
Manual GO annotation by UniProt 4254 765
Total number of Pubmed references 3880
Number of distinct Pubmed references 794
Electronic GO annotation using InterPro to GO mapping 14663 7975
Electronic GO annotation using Hamap to GO mapping 230 68
Electronic GO annotation using Swiss-Prot keyword to GO mapping 8104 5810
Electronic GO annotation using UniProt Subcellular Location to GO mapping 1912 1535
Electronic GO annotation using EC to GO mapping 473 443
Electronic GO annotation using Compara projections 72411 9362
Electronic GO annotation using UniPathway to GO mapping 200 186
Electronic GO annotation using UniRule to GO mapping 394 281
Inferred electronic annotations based on GOC rules 3226 2282
Manual GO annotation by AgBase 3605 630
Manual GO annotation by MGI 31 20
Manual GO annotation by BHF-UCL 115 36
Manual GO annotation by HGNC 46 11
Manual GO annotation by Roslin Institute 22 9
Manual GO annotation by Reactome 425 106
Manual GO annotation by IntAct 214 96
Manual GO annotation by DFLAT 15 8
Manual GO annotation by RefGenome 20613 4674
Manual GO annotation by CACAO 10 9
Manual GO annotation by ParkinsonsUK-UCL 15 7
Inferred manual annotations based on GOC rules 1075 901
Inferred manual and electronic annotations based on GOC rules 4301 2889