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Collapse UniProt
The premier centralised resource for protein sequences and functional information.
Collapse UniProtKB/ Swiss-Prot
An annotated protein sequence database.
Collapse UniProtKB/ TrEMBL
A computer generated protein database enriched with automated classification and annotation.
Collapse EMBL
Europe's primary nucleotide sequence resource.
Collapse InterPro
A database of integrated documentation resources for protein families, domains and functional sites.
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EBIDownloads

Downloads from the EBI FTP Server

The European Bioinformatics Institute (EBI) FTP server provides a comprehensive archive of databases and software in the field of bioinformatics. Below are the main directory links of this server.



Directory Explanation
Main Directories
databases The Database Repository
software The Software Repository
help Help Files
Data Resources
1000 genomes 1000 genomes project sequencing data FTP site
ArrayExpress More Information ArrayExpress Database FTP Site
ATD More Information ATD Database FTP Site
chEBI Dictionary and ontology of chemical entities FTP site
chEMBL Database of bioactive drug-like small molecules FTP site
dsspMore Information DSSP Database FTP Site
dgva Repository of genomic variants FTP Site
embl More Information EMBL Nucleotide Database FTP Site
fastafiles ENA, UniProt and Patent sequence data FTP site
fsspMore Information FSSP Database FTP Site
emdb Electron microscopy density maps of macromolecular complexes and subcellular structures.
Ensembl Ensembl FTP site
Ensembl Genomes Ensembl Genomes FTP site
goa More Information GOA Database FTP Site
hsspMore Information HSSP Database FTP Site
Integr8 Genome_reviews data FTP site
interpro More Information InterPro Database FTP Site
Intenz Enzyme data FTP site
IntAct More Information IntAct data in PSI MI XML format
IPI More Information IPI cross reference files
lrgex Stable genomic reference sequences.  
Microcosm Predicted targets for microRNA sequences.
NMRShiftDB More Information NMRShiftDB is a NMR database for organic structures and their nuclear magnetic resonance spectra.
Patentdata EPO data FTP site
PDBe More Information PDBe Database FTP Site
PRIDE PRIDE proteomics data FTP site
pdb_finder Mirror of PDBFINDER (http://swift.cmbi.ru.nl/gv/pdbfinder/) from CMBI (ftp://ftp.cmbi.kun.nl/pub/molbio/data/pdbfinder/).
RESID More Information RESID Database FTP Site
RHEA Biochemical reactions data FTP site
Wormbase Wormbase FTP Site
Universal Protein Resource Downloads
UniProtKBMore Information Universal Protein Resource.
  • UniProtKB/Swiss-Prot
 download SwissProt Knowledgebase in XML format download SwissProt Knowledgebase in FASTA format download SwissProt Knowledgebase in flat file format
  • UniProtKB/TrEMBL
 download Trembl Knowledgebase in XML format download Trebml Knowledgebase in FASTA format download TrEMBL Knowledgebase in flat file format
UniRef More Information UniProt Reference Clusters.
download UniRef100 in XML format download UniRef100 in FASTA format
download UniRef90 in XML format download UniRef90 in FASTA format
download UniRef50 in XML format download UniRef50 in FASTA format
UniParc More Information Unavailable
UniMESMore Information The UniProt Metagenomic and Environmental Sequences database.
  download UniMES in FASTA format

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IPI

The International Protein Index (IPI) is a non-redundant human proteome set constructed from UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, Ensembl and RefSeq.
Download >>>

GOA

GOA provides assignments of proteins in UniProtKB/Swiss-Prot, UniProtKB/TrEMBL and IPI to the Gene Ontology resource. The goal of the GO Consortium is to produce a dynamic controlled vocabulary that can be applied to all organisms.
Download >>>

IntAct

IntAct is a protein interaction database and analysis system. It provides a query interface and modules to analyse interaction data.
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ArrayExpress

ArrayExpress is a public repository for microarray data, which is aimed at storing well annotated data in accordance with MGED recommendations.
Download >>>

PDBe

The Protein Databank in Europe is a European project for the collection, management and distribution of data about macromolecular structures.
Download >>>





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