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Collapse UniProt
The premier centralised resource for protein sequences and functional information.
Collapse UniProtKB/ Swiss-Prot
An annotated protein sequence database.
Collapse UniProtKB/ TrEMBL
A computer generated protein database enriched with automated classification and annotation.
Collapse EMBL
Europe's primary nucleotide sequence resource.
Collapse InterPro
A database of integrated documentation resources for protein families, domains and functional sites.
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EBIDownloads

Downloads from the EBI FTP Server

The European Bioinformatics Institute (EBI) FTP server provides a comprehensive archive of databases and software in the field of bioinformatics. Below are the main directory links of this server.



Directory Explanation
Main Directories
databases The Database Repository
software The Software Repository
help Help Files
Databases
ArrayExpress More Information ArrayExpress Database FTP Site
ASD More Information ASD Database FTP Site
ATD More Information ATD Database FTP Site
embl More Information EMBL Nucleotide Database FTP Site
dsspMore Information DSSP Database FTP Site
fsspMore Information FSSP Database FTP Site
Ensembl Ensembl FTP site
Ensembl Genomes Ensembl Genomes FTP site
goa More Information GOA Database FTP Site
hsspMore Information HSSP Database FTP Site
interpro More Information InterPro Database FTP Site
IntAct More Information IntAct data in PSI MI XML format
IPI More Information IPI cross reference files
pride More Information The PRIDE PRoteomics IDEntifications database is a centralised, standards compliant, public data repository for proteomics data.
PDBe More Information PDBe Database FTP Site
RESID More Information RESID Database FTP Site
Universal Protein Resource Downloads
UniProtKBMore Information Universal Protein Resource.
  • UniProtKB/Swiss-Prot
 download SwissProt Knowledgebase in XML format download SwissProt Knowledgebase in FASTA format download SwissProt Knowledgebase in flat file format
  • UniProtKB/TrEMBL
 download Trembl Knowledgebase in XML format download Trebml Knowledgebase in FASTA format download TrEMBL Knowledgebase in flat file format
UniRef More Information UniProt Reference Clusters.
download UniRef100 in XML format download UniRef100 in FASTA format
download UniRef90 in XML format download UniRef90 in FASTA format
download UniRef50 in XML format download UniRef50 in FASTA format
UniParc More Information Unavailable
UniMESMore Information The UniProt Metagenomic and Environmental Sequences database.
  download UniMES in FASTA format

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IPI

The International Protein Index (IPI) is a non-redundant human proteome set constructed from UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, Ensembl and RefSeq.
Download >>>

GOA

GOA provides assignments of proteins in UniProtKB/Swiss-Prot, UniProtKB/TrEMBL and IPI to the Gene Ontology resource. The goal of the GO Consortium is to produce a dynamic controlled vocabulary that can be applied to all organisms.
Download >>>

IntAct

IntAct is a protein interaction database and analysis system. It provides a query interface and modules to analyse interaction data.
Download >>>

ArrayExpress

ArrayExpress is a public repository for microarray data, which is aimed at storing well annotated data in accordance with MGED recommendations.
Download >>>

PDBe

The Protein Databank in Europe is a European project for the collection, management and distribution of data about macromolecular structures.
Download >>>





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