2Can Support Portal - PDBe Tutorials

Introducton

Welcome to our tutorial pages! Please check back regularly to these pages over the coming months as we develop our range and depth of tutorials.

As a start PDBe have created a few beginner tutorials for those users who are completely new to PDBe and also some intermediate tutorials which expect some knowledge of our specialist scientific area.

Beginners

Viewing s - AstexViewer™@msd-ebi tutorial

Searching s - MSDPro beginners tutorial

Ligand Search - MSDChem beginners tutorial

Intermediate

Lectin Tutorial - This tutorial uses the PDBe tools to look at structural distribution and ligand discrimination in C-type lectins. This tutorial uses MSDlite, PDBeSite, MSDfold and MSDpro services - Start Tutorial

Structural Genomics Tutorial - This tutorial uses the PDBe tools to look at an example where a protein with unknown function can be assigned to a structural and functional class. This tutorial uses MSDlite, PDBeSite and MSDfold tools - Start Tutorial

PDBeSite Tutorial - This tutorial investigates the use of the PDBe tool PDBeSite to search ligand binding sites, and more - Start Tutorial

PDBeSite - A Case Study - This tutorial is aimed at showing how PDBeSite can be used to mine and search for knowledge related to issues such as Modelling and Drug Design studies. The tutorial also uses the MSD tool MSDfold - Start Tutorial

Database Tutorial - This is a demonstration of a standalone replica version of the PDBe Search Database (PDBeSD) in mySQL, together with tools and examples about how to use it and how to incrementally synchronise it with the master PDBe database at EBI - Start Tutorial

MSDmine Tutorial - This is a demonstration of a standalone replica version of the MSDmine web application accessing a local standalone version of the PDBe Search Database (PDBeSD) in mySQL - Start Tutorial

MSDtarget Tutorial - The provides the opportunity to try out the Target Information Server. This is a tool for searching and tracking Structural Genomics targets. These include public domain SG, PDB and prereleased PDB sequences - Start Tutorial

PDBeMotif Tutorial - This tutorial investigates the use of the PDBe tool PDBeMotif - Start Tutorial

Documentation

PQS Help

PDBe API Docs

PDBe Search Database Docs

AstexViewer(TM)@MSD-EBI Docs

Visualisation Docs