2Can Support Portal - Nucleotide Analysis - BLAST2 EVEC Results

BLASTN 2.2.15 [Oct-15-2006]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Sequence 2
         (4145 letters)

Database: emvec 
           1758 sequences; 7,994,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

 EM_VEC:L8318BY AL354421.1 Leishmania major Friedlin cosmid L8318...    42   0.007

 EM_VEC:AF338825 AF338825.1 Cloning vector pHLH/int(+), complete ...    34   1.7  
 EM_VEC:AY142483 AY142483.1 Cloning vector pSM565, complete seque...    32   6.6  
 EM_VEC:AY091640 AY091640.1 Cloning vector pRAF800, complete sequ...    32   6.6  
 EM_VEC:AB105370 AB105370.1 Cloning vector RCAS-L14 DNA, complete...    32   6.6  


>EM_VEC:L8318BY AL354421.1 Leishmania major Friedlin cosmid L8318.2 t7 end-sequence,
            similar to CV59231 U59231 Cloning vector cLHYGpk,
            complete sequence...., N=2277, Prob=3.2e-192.
          Length = 650

 Score = 42.1 bits (21), Expect = 0.007
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 3786 gtgtgcgtgtgtgtgcgtgtgcgtgcgtgcgtgcgtg 3822
            ||||| ||||||||| ||||| ||| |||||||||||
Sbjct: 222  gtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtg 186



 Score = 38.2 bits (19), Expect = 0.11
 Identities = 31/35 (88%)
 Strand = Plus / Minus

                                               
Query: 3792 gtgtgtgtgcgtgtgcgtgcgtgcgtgcgtgcgtg 3826
            ||||||||| ||||| ||| ||| |||||||||||
Sbjct: 220  gtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtg 186


>EM_VEC:AF338825 AF338825.1 Cloning vector pHLH/int(+), complete sequence.
          Length = 7774

 Score = 34.2 bits (17), Expect = 1.7
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                 
Query: 3762 tataaataaatatattatata 3782
            |||| ||||||||||||||||
Sbjct: 2180 tatatataaatatattatata 2160


>EM_VEC:AY142483 AY142483.1 Cloning vector pSM565, complete sequence.
          Length = 6885

 Score = 32.2 bits (16), Expect = 6.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 2349 tctgccatcggacatg 2364
            ||||||||||||||||
Sbjct: 5997 tctgccatcggacatg 6012


>EM_VEC:AY091640 AY091640.1 Cloning vector pRAF800, complete sequence.
          Length = 4245

 Score = 32.2 bits (16), Expect = 6.6
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                                
Query: 2760 gccttagctgattaacttaa 2779
            |||||| |||||||||||||
Sbjct: 3309 gccttatctgattaacttaa 3290


>EM_VEC:AB105370 AB105370.1 Cloning vector RCAS-L14 DNA, complete sequence.
          Length = 11572

 Score = 32.2 bits (16), Expect = 6.6
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 1722 accgtcggagggagct 1737
            ||||||||||||||||
Sbjct: 612  accgtcggagggagct 627


  Database: emvec
    Posted date:  Jan 5, 2005 10:14 AM
  Number of letters in database: 7,994,872
  Number of sequences in database:  1758
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: BLASTN matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 1758
Number of Hits to DB: 291,956
Number of extensions: 15957
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 8
Length of query: 4145
Length of database: 7,994,872
Length adjustment: 18
Effective length of query: 4127
Effective length of database: 7,963,228
Effective search space: 32864241956
Effective search space used: 32864241956
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
S2: 16 (32.2 bits)